BAC Information

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BAC

Clone NameMSMg01-160F15
Chromosome2 (Build37)
Map Location 58,373,699 - 58,373,985
singlet/doubletsinglet
Overlap genenone
Upstream geneGalnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062, Acvr1
Downstream geneLOC674940, Upp2, BC062650, Pkp4, LOC625354, 2310032F03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160F15.T7 (MSMg01no160_f15.b1)MSMg01-160F15.TJ (MSMg01no160_f15.g1)
ACCAG360047AG360048
length760715
length of high quality
(start - end)
---282 (75 - 356)
definitionCHROMAT_FILE: MSMg01no160_f15.b1 PHD_FILE: MSMg01no160_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:17 2005CHROMAT_FILE: MSMg01no160_f15.g1 PHD_FILE: MSMg01no160_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTGTACAGTGCTGATTCCCATTTAGGTAACGCGGTTATTTGAGTTTA
TGAAGTTCAACCTCTTGTGGTATCGAATTTGATGGCAATTATTTGCCTGT
CTGAGATAAGAAGGAAAGGATCCTTGAACAGACGGTAGCACGTCTTTTTC
GTTTATAGAGCGAGTGTTTTGCTTAGGAGACAGTTATAAATGTTCATGAA
GTGGAATGGTGTCGTGCTCAACATAACCGGCAGCTGGTTGTTATGCTACT
CTTAACCTATGGGATTGTTCTATTCTGTCCAAGACGCCATCCCAGGACCA
CAGATATTTATTGTTTGGCCCCCCCCCCCCCCCGGGTGTATTGGAGTGGA
TTACACAGGGGTTCCCCCCCCTTTTAAAAAAAAAAAAACCCGTGGGGGGC
TCGTTTTGAACCCCATTTCCTGTATGTCAGACGCTGAGATCTGGGGGACC
CAGCGGTCTTATATTTTGTCTCGGATGCGCCACAATAAGTGGATGCGTAT
GATGTCCAGTATATCCCATACCTATACATACCGGCGGTTAAATTTTTCCA
CCAACCTCCCGTTAAACCCCGCTTTTGGCGTTAATCCTTTGTTTACTTTC
CGCTTATGCACTAATTGTTGGTTGTAAACACTACTCTATATGCGTTTGTT
TTAGCCTGTGCAGTCAGGCCGCTGTTTTATCAAATACTATTGTATTCCAA
CGCCTGTTTG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAACCGTAGAAGTGCCACCATCCCTCC
AGGCATACATCTATGGACGAGTAGGAAACAAACATATAAGATGTCTAAGA
GGAGAAAAAGAAAGGGTTAGAGAAAGATGGCACAATGTGAAAAATAAATG
AGAATCTCCTGGGTGTTTTAAGTTAAAACACATAAATCTGCCCCCAGCCT
ACAGACCAGCCAAAGATACAAAGATGGCTGTACACTCCCAGGAACTTGAC
TTAAGGCCCAACTATCAGAGAGACTCTAGAATTTAATGTATAATTTGGCT
GAGGAGGTTTTTTCATGCCGCCACTACTTAATTACTCGGTGTAATTAAGT
ACCAGACTACACTTCCCAACATAACCTGCTTATATTTTGTAACCTCCAAA
CTCTCCACTGAAGTGGTTTGGCGGTCCATCAAAATCCTTTTCATGTGTCC
AACCAGAGACCCATTTACTTGTGCCATAAACATAATGAGATTCAAGGATG
AATCTTGAGAGAACTGAGGCCACAGGCCTTATTAGAGCTCCAGATTTGCA
CCAGAGCCCTGGGTTGAAGTCTCATTTCCTGTTTACTGACTGTCACGCGG
TCCCGACTCATCTTTCATGGAGCCATAAGCGCGCCCCGCTGATTTCCTTG
TTTAGCTCCTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_f15.g1 MSMg01no160_f15.g1 CHROMAT_FILE:
MSMg01no160_f15.g1 PHD_FILE: MSMg01no160_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:17 2005
         (282 letters)



>mm_chr2_58373499_58374185
          Length = 687

 Score =  509 bits (263), Expect = e-148
 Identities = 279/287 (97%), Gaps = 5/287 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaccgtagaagtgccaccatccctccaggcatacatctatggacgagtaggaaacaaaca 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaccgtagaagtaccaccatccctccaggcatacatctatggacgagtaggaaacaaaca 260

                                                                       
Query: 61  tataagatgtctaagaggagaaaaagaaagggttagagaaagatggcacaatgtgaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tataagatgtctaagaggagaaaaagaaagggttagagaaagatggcacaatgtgaaaaa 320

                                                                       
Query: 121 taaatgagaatctcctgggtgttttaagttaaaacacataaatctgcccccagcctacag 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 taaatgagaatctcctgggtgttttaagttaaaacacataagtctgcccccagcctacag 380

                                                                       
Query: 181 accagccaaagatacaaagatggctgtacactcccaggaacttgacttaaggcccaacta 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accagccaaagatacaaggatggctgtacactcccaggaacttgacttaaggcccaacta 440

                                                          
Query: 241 tcagagagactct-----agaatttaatgtataatttggctgaggag 282
           |||||||||||||     |||||||||||||||||||||||||||||
Sbjct: 441 tcagagagactctcctctagaatttaatgtataatttggctgaggag 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 687
Length adjustment: 9
Effective length of query: 273
Effective length of database: 678
Effective search space:   185094
Effective search space used:   185094
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)