BAC Information

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BAC

Clone NameMSMg01-160H17
Chromosome2 (Build37)
Map Location 115,334,277 - 115,334,491
singlet/doubletsinglet
Overlap geneLOC100043232
Upstream geneAtpbd4, LOC100043219, LOC100043222
Downstream geneLOC100043236, BC052040, Mrg1, G630016G05Rik, 2810405F15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160H17.T7 (MSMg01no160_h17.b1)MSMg01-160H17.TJ (MSMg01no160_h17.g1)
ACCAG360142AG360143
length717727
length of high quality
(start - end)
215 (132 - 346)282 (70 - 351)
definitionCHROMAT_FILE: MSMg01no160_h17.b1 PHD_FILE: MSMg01no160_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:27 2005CHROMAT_FILE: MSMg01no160_h17.g1 PHD_FILE: MSMg01no160_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATACCAAAGCAGCAAATGGGGTTTCCAATGGCCGCTTCTGCTGACTTC
CATGACCCTTTTGCATCCAACAGCACAGCAATCATTTCCACCAGGAAACT
GATTTATGTACCAAGACCCTGAGCTCTGAACTCCATGGGTCATGTCTAGT
TTTGCTGTGCCCTATAGAACATAATCACCATGATGTCTTCCAGTGAGTGA
CCCACAAATAAAGGATTCACAAATAAAGAAGGCTCTGTTAAATAAATATC
ATAGAGTTAGTCTTCTCCTCTCTCTGCTGCTCTCATCGTTCTGTCTGCTG
GATCCACGGATTCTTTTTTGGCCCCTGCCCCCCCACATCTCTATATCTTT
CCAGCAGAACCTCTGCTACCCCCCTCCTAAATTCCTACTAAATTTGCTTC
TTGGATCCCAGGCTGAGCCAACCACTTTCTGGTCCCCTAACCCGAACTTG
ATTCAATTCGTCACCTGGACCAGTGAGGTCCAGTATTGTGTTTCTTCAGA
TCATAGAACAGGACTGTACTTTTATGCTGTTTCATAGTTCCCATATTCTT
ACACTATACATTTACATGTCCTTGTTCCACAAGGAATGAGAGATTTTTAA
ACGTCTTTTATTTCCTTGAATCTGCAGACAACGTCGAGTTAATACTAAAT
GCTTATCCCCCCATTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAATCAGACACACCGTTAACACACAAATCACC
TTCCTATCAATTCGAGAAGTGCTCCCTAGGTTCTCAGACTGCAGGTTTCG
ACCGCTTGGAGGTTTGCATATCAGATATTCTGCACATCAGATATTTACAT
TATAATTTATAACAGTAGCAAAATTACGGTTATAAAGTAGCAGCAAAATA
ATTTTATGGTTGGGGTCAGCACAGCAAGAGGACCTGTATTAAAGGGTCAC
AGCATTTGGAAGGTTGAGAACCTCAAAACTAAAGGGAAATGATCATAATG
TTATTTTTTTGAGCCTCCCCCCCTGTAATTATTTTCTTGATGCCTTAAGT
ACTGTTCACCCCCCATTGCTGTTTGGGGGAAGAAAAGCAACAGAATATGA
CATCAGGATTTCGTCGCAATTTACAAGGAGGAGGAGGAGGAAGAATGAAC
TAAGGCTGCTGTTAGGCAGATTCTTTTCTAAGTCTAATGACTACAACTCT
AAAAAGCTCTGCAAGAAACACCCTTGAGTAGATAACAGTAACAATAACGA
GCTCTGTGGTAGCTAGGGTATCAAGGTTTGTGTTTTCTATGTTACTTATT
CTCATTTGAACTGGAAAGGATTTCTTTTCATATTTAATGGTATTCCGTCC
AGGATAGTTAGGTATTCTCCTAGGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_h17.b1 MSMg01no160_h17.b1 CHROMAT_FILE:
MSMg01no160_h17.b1 PHD_FILE: MSMg01no160_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:27 2005
         (215 letters)



>mm_chr2_115334077_115334691
          Length = 615

 Score =  393 bits (203), Expect = e-114
 Identities = 212/215 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatttccaccaggaaactgatttatgtaccaagaccctgagctctgaactccatgggtc 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatttccaccaggaaactgatttaggtaccaagaccctgagctctgaactccatgggtc 260

                                                                       
Query: 61  atgtctagttttgctgtgccctatagaacataatcaccatgatgtcttccagtgagtgac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 261 atgtctagttttgctgtgccctatagaacataatcaccatgatgtcttccagggtgtgac 320

                                                                       
Query: 121 ccacaaataaaggattcacaaataaagaaggctctgttaaataaatatcatagagttagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacaaataaaggattcacaaataaagaaggctctgttaaataaatatcatagagttagt 380

                                              
Query: 181 cttctcctctctctgctgctctcatcgttctgtct 215
           |||||||||||||||||||||||||||||||||||
Sbjct: 381 cttctcctctctctgctgctctcatcgttctgtct 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space:   124836
Effective search space used:   124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)