BAC Information

Click to search

BAC

Clone NameMSMg01-161B18
Chromosome2 (Build37)
Map Location 148,630,178 - 148,630,555
singlet/doubletsinglet
Overlap geneCst8
Upstream geneLOC100043820, Foxa2, LOC383752, Sstr4, Thbd, Cd93, Nxt1, Gzf1, Napb, Cstl1, Cst11, 8030411F24Rik, Cst12
Downstream geneCst13, Cst9, 9230104L09Rik, Cst3, OTTMUSG00000015744, Gm1330, EG668921, LOC433483, LOC383754, LOC100043593, LOC241715, Cst10, EG667048
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161B18.T7 (MSMg01no161_b18.b1)MSMg01-161B18.TJ (MSMg01no161_b18.g1)
ACCAG360599AG360600
length1,2511,251
length of high quality
(start - end)
413 (45 - 457)415 (70 - 484)
definitionCHROMAT_FILE: MSMg01no161_b18.b1 PHD_FILE: MSMg01no161_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:21 2005CHROMAT_FILE: MSMg01no161_b18.g1 PHD_FILE: MSMg01no161_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGCGGCATTGGGCGCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAACCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGTAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGT
TCATATTTGCCCTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGC
CCCTTTTTTTTTCCCCCCCCCCCGAAAATGTGGTACATCTACACAAAGAA
GGACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGG
AACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTA
GGATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCATGAA
AAATGAAGACTGAAGTGTGGACACTACGCCCCTCCTTAGAAGTGGGAACC
AAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGATGAAA
GGATGGACCATGTAGAGACTGCCATATCCAGNGATCCACCCCATAATCAG
CATCCAAACGCTGACACCATTGCATACACTAGCAAGAATTTATCGAAAGG
ACCCGATGTAGCTGTCTCTTGGGAGACTATGTGCGGGCCTATCAAACACA
AAATGGTATGTTCCAGGTCTCCTTATGGATGGGTTCCAGGGCTTCCCATG
GTGGGAATTTCTATAATATTTCCCTTGTTTTTTAAGGGATTTGGCACTCC
TTTTTGGTGTAACATATTTTTTGTATTAACTCTTTTCCCCCGAGAGCGCT
TTACTTCTTTCTGGCTNATTGTTTTTAAATAAAGACTCTATCTCCCATTC
TTCTATATAGATAGGAATTCTTTTTATACTCTATCTTATTATTTCCCTCT
TCTCTATTATCCTCCTTGTGTATAAATATTTATTATATATTTTTTNTCAT
T
NNTTCGCGACGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGCGATGGCACTGTTCTTTCCCAGACCACGT
GGAAAGAGAAAAGTAGAGAGATGAGAGAGAGAAGGACTTTCATATTTCCC
AAAGCTTTTAGGAGTTAATCTAAAACATTTTTAATCCAAGTTTCCCCCAT
TGTTTATTGACAGATCACAGACCGAATGGAATACCAAATTGATGTTCAGA
TCTCCCGCAGTAATTGCAAAAAACCTTTAAACAATACTGAAAACTGCATC
CCTCAAAAAAAACCCGAACTGGAAAAAGTAAGTGACTTTAAGTCCCATCT
AGGGTTATCAAAGCTTCAAGGTAGTTGGGAAATCTTAGGGCGCCCAGCCT
AATATCTCCAAGGGTTCTGGATTGCTCCCCGCTTGGAGTCCCAGAAGGCC
TTTTTTGCCCCCCCCCGAGTAGAAGATGCAGCAGCATCAAAGAAAGTCGT
AACCCCAAAACTCCCATCAACTCTGGACTTTTAAGGCAGAAAAAACTATT
GAAATTTGTTTTCTGAAAGTCTGTCCCCTTGGACTGAGACTAATTTGTCC
AGCTAATGAGGTGAATCATTCATGCTGTGCAGTCATGAAGGAAGTCTGCG
TGGACAATCATCTTAACTTAGAGCACAGGTACTAGTCATCTGCAGCAGGC
CTGTTCCAAATACAGGAGATTAGACAATATCTAGACCAGATAGCATCCCA
AGCTTTCTCTGCACACTCAAGTTTTAAAAGGCTTATCACATCCAGAGAGT
AGTAGGTACTCACTGGAGCAAATATGTCAGCCCTGAGCAAGCCCTGACGC
CATTTCACATACCTGCTTTGTCATTTACTGTTGTTTGCAAATTGTGGATT
TACTTTTATATTTCCTGCTGGGGCCCCTTGGAATTTTAGGAAAGTTGGGG
GGATGGCCTTCTAGCCAAATTCTTTAGGTAAAGCCCGGAGAAAAGGGCAG
TCTCTTTTCCTTTTTAACAGGGGCGGAAGGCCCTTGTCTGGGGGCCTTTT
TCCAAAAAAAAATGGAGATTTTTGTGTTGGAACACCTCCCTGGGAATGGG
GGATTTAATCTCGGTTAGTAAAAAAAGAAAAGAATTGTCTATGGGGGTCT
GTTGAGAATTCCCCCCCCTCTCGGGCGGGGTTTTTTCCTGGTTAAAGAAA
AAACCTGTGTTTTGGTTTTGTTTCTAACAACTTTTTCCGTGGGTGGTCCT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_b18.g1 MSMg01no161_b18.g1 CHROMAT_FILE:
MSMg01no161_b18.g1 PHD_FILE: MSMg01no161_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:21 2005
         (415 letters)



>mm_chr2_148629978_148630789
          Length = 812

 Score =  665 bits (344), Expect = 0.0
 Identities = 371/382 (97%), Gaps = 5/382 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcgatggcactgttctttcccagaccacgtggaaagagaaaa-gtagagagatgagaga 59
           ||||||||||||||||||||||||||||||||||||||||||| |||||    |||||||
Sbjct: 201 agcgatggcactgttctttcccagaccacgtggaaagagaaaaagtaga----tgagaga 256

                                                                       
Query: 60  gagaaggactttcatatttcccaaagcttttaggagttaatctaaaacatttttaatcca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gagaaggactttcatatttcccaaagcttttaggagttaatctaaaacatttttaatcca 316

                                                                       
Query: 120 agtttcccccattgtttattgacagatcacagaccgaatggaataccaaattgatgttca 179
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aatttcccccattgtttattgacagatcacagaccgaatggaataccaaattgatgttca 376

                                                                       
Query: 180 gatctcccgcagtaattgcaaaaaacctttaaacaatactgaaaactgcatccctcaaaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gatctcccgcagtaattgcaaaaaacctttaaacaatactgaaaactgcatccctcaaaa 436

                                                                       
Query: 240 aaaacccgaactggaaaaagtaagtgactttaagtcccatctagggttatcaaagcttca 299
           |||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||
Sbjct: 437 aaaacccgaactggaaaaagtaagtggcttcaagtcccatctaaggttatcaaagcttca 496

                                                                       
Query: 300 aggtagttgggaaatcttagggcgcccagcctaatatctccaagggttctggattgctcc 359
           ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 497 aggtagttgggaaattttagggcgcccagcctaagatctccaagggttctggattgctcc 556

                                 
Query: 360 ccgcttggagtcccagaaggcc 381
           ||||||||||||||||||||||
Sbjct: 557 ccgcttggagtcccagaaggcc 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 812
Length adjustment: 9
Effective length of query: 406
Effective length of database: 803
Effective search space:   326018
Effective search space used:   326018
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)