BAC Information

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BAC

Clone NameMSMg01-161C03
Chromosome2 (Build37)
Map Location 56,232,441 - 56,232,883
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161C03.T7 (MSMg01no161_c03.b1)MSMg01-161C03.TJ (MSMg01no161_c03.g1)
ACCAG360617AG360618
length1,1281,283
length of high quality
(start - end)
414 (43 - 456)---
definitionCHROMAT_FILE: MSMg01no161_c03.b1 PHD_FILE: MSMg01no161_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:24 2005CHROMAT_FILE: MSMg01no161_c03.g1 PHD_FILE: MSMg01no161_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTCATTTGGCGCTATXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGTGATTGTTTCTGTCTACTGGAAAAAAGAAACCTTTTTTATTTTAC
CTAAAAGGTTTTATTAATAAAGTTCAGCAGAAAATTTATTAAGAAGGTAT
TTGTTTGTTTGTTTGTTTAATGTTTATATGAATACACTGTAGCTGTCTTC
AGACACACAAGAGAGGACATCAGATCCTATTACAGCTATCTATGAGCCAT
CATGTGGTTGATGATTGATCTTCTGGAAGAGGAGTTAGTGCTTTTAACTG
CTGAGCCATTTCTCCAGCCCCAATAAGAAGTTTTTTGATGAGGGGTTAGA
GCTAAACTAATCTGGTCTGAATTAAGTTGGTCATTATACAACTCTAGGAA
AGTATAAGAATTAGACTCCCCTCTAGGGTCCATAGCCTCATGAACTATGT
TGATTATTTTTCCCCCCCCCGGAAAGAATTCTCTCTTACTGAACAGAAGT
TAAGTCCAGTTCAGTGACTGTTGGGTACCCAAAATACAAAAGTGCTGTTA
TTGCACCCTCTATCTATCTTGCCATGTCGTTCAATGTTGTGGTATATAGT
TTTTACAACTATGTAGGACTTTTAATTGCTTTTCTTCCTTGGCAGCTTGC
ACACACCTGTAACATGGTACTTTAATAATAATTCAAATATAAACTTCTAT
TTCTTTCATGGTAAAGTAGTGCATGACTTTGTTTTTAAACCAGTTGTATT
AAAATACATTATCTAGTACAAAAATAAACCATTTCTATGACTTAAAATGT
TTCAATTGAAATGTAAATTTTAAGAAATGTACTAGGCATGCCTCAAAGAG
CTTTGTCACTTGTTGTGCTCTGGAGACTGATGACAGTTGAAATGTGGGAA
CTTTTTTAAAAAAAGAATCTCTAGGCCCCTTTCCGCATTAATTAAAAAAA
ACCCCGTAAAAATGAAAATTTTTTTTTTTCTTTTCTGGAAAGAGGGTCTT
TTTTATGTGGATGAAAAAAAAAACTTTTTTAAAAATTTTTTTTTTTGAAA
AAAAAAAATATATCCATTTTTATTTATAAAGGGGCGAAAAAAAAAACCTA
AATAATTTTGGGGTGGAAAAAAATAAAA
NTTTAGATAGGTAGCGGCGCCGCGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGAACCAGAAATGGGTGTGAGTGGTTTGGGA
ACATGGGGAAGGGAAAAAGGATAGGGCCCCTTTTTGTTTTTTTTTTTTCT
TTCTCTTTCTTTTTTTTTTTTTTTTTTATCCTCCTCTGTCCTTTTTTTTT
TTTTCGTCTTTTTTTTTTAAATGGTAAAAAATTTTTTTGTTTATATTTAT
TTTTTTTTTCATATATTATTCGTATGTATTTTTTTTTTTTTCTTATAATA
CTATTTATTTAAAATTATTATTCTTTATTTTTTTTTTATTAAATCTTATA
ATATATTACTATTTCTATATAAATATTTATAATATTATAATTATTATTTT
TTTTTTTAAACAATAAAACAAAACACAATTAGAGGAGAAAAAAAAATTTT
TTTTTTTTTCCCCCGCCCCTTTANANNNNNNNNNNNAAAAAAAAAAAAGA
GGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_c03.b1 MSMg01no161_c03.b1 CHROMAT_FILE:
MSMg01no161_c03.b1 PHD_FILE: MSMg01no161_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:24 2005
         (414 letters)



>mm_chr2_56232237_56233050
          Length = 814

 Score =  658 bits (340), Expect = 0.0
 Identities = 404/444 (90%), Gaps = 35/444 (7%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgtgattgtttctgtctactggaaaaaagaaaccttttttattttacctaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgtgattgtttctgtctactggaaaaaagaaaccttttttattttacctaaaa 264

                                                                       
Query: 65  ggttttattaataaagttcagcagaaaatttattaagaaggtatttgtttgtttgtttgt 124
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 ggttttattaataaagttcagcagaaagtttattaagaaggtatttgtttgtttgtttgt 324

                                                                       
Query: 125 tt------------aatgtttatatgaatacactgtagctgtcttcagacacacaagaga 172
           ||            |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 ttgtttgtttgtttaatgtttatatgaatacactgtagctgtcttcagacacaccagaga 384

                                                                       
Query: 173 ggacatcagatcctattacagctatctatgagccatcatgtggttgatga---ttgatct 229
           |||||||||||||||||||||||||||||||||||||||||||||| |||   |||||||
Sbjct: 385 ggacatcagatcctattacagctatctatgagccatcatgtggttgctgagaattgatct 444

                                                                       
Query: 230 tctggaagaggagttagt-gcttttaactgctgagccatttctccagccccaataagaag 288
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctggaagaggagttagtag-ttttaactgctgagccatttctccagccccaataagaag 503

                                                                       
Query: 289 tttttt-gatgaggggttagagctaaactaatctg---gtct--------------gaat 330
           |||||| ||||||||||||||||||||||||||||   ||||              ||||
Sbjct: 504 tttttttgatgaggggttagagctaaactaatctgtgggtctaagatcattatatagaat 563

                                                                       
Query: 331 taagttggtcattatacaactctaggaaagtataagaattagactcccctctagggtcca 390
           |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 564 taagttggtcattatacaactctaggaaagtagaagaattagactctcctctagggtcca 623

                                   
Query: 391 tagcctcatgaactatgttgatta 414
           ||||||||||||||||||||||||
Sbjct: 624 tagcctcatgaactatgttgatta 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)