BAC Information

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BAC

Clone NameMSMg01-161D21
Chromosome2 (Build37)
Map Location 19,062,224 - 19,062,625
singlet/doubletsinglet
Overlap genenone
Upstream geneMllt10, LOC641254, Dnajc1, LOC100041388, LOC623325, LOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479, Pip5k2a, 4930426L09Rik, LOC667521
Downstream geneArmc3, Msrb2, LOC100041196, Ptf1a, LOC100041534, 4921504E06Rik, LOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161D21.T7 (MSMg01no161_d21.b1)MSMg01-161D21.TJ (MSMg01no161_d21.g1)
ACCAG360697AG360698
length1,2041,216
length of high quality
(start - end)
417 (28 - 444)379 (71 - 449)
definitionCHROMAT_FILE: MSMg01no161_d21.b1 PHD_FILE: MSMg01no161_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:37 2005CHROMAT_FILE: MSMg01no161_d21.g1 PHD_FILE: MSMg01no161_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCAGCATTCGNCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCTG
TATTAATATAGTCTGTAATGTAATATAGTAGCTGCAAGTGCAATACTATA
TTAAATTGAAAGTATTTCTCTTACCACACACTCAGTTGCCTAGTTTACTT
TCTACACACTATCAAATTTGATGTAATAAGACCAGTATGTTCTTTCTGGT
TTTGCTACACTGGGGATGAGAGCCAGGGCTTTGCCTGCAATAGATGAGTG
TTATGCTGCTGAGCCATATCCTCATCCCTAACATCCCTAAACTAAATACC
CTGGATGCTGCATCCCTAAGATGATGTAATCAACTAGAGAACAGCCATGG
TAACAGGGCTATAGTGGTTTCTTCTATGAAAGGGCCATAATAGAAACTAA
CTCACAATGATTATTAGCCTAAGTCTGAGAAGGCACAGCATTCTGTTTTT
TTTTCCCCCCCCCCCTGTAAGGATGGATTCATGAAAACAAAAAAACATGA
GTTTGTACAGAGATGAATGACTCACTGTCCCAGGACTAGGAAGGGAACTG
GTTAGCTCCAGTAACAATTCAATTCAGTTGTCTGATTAATAAACCAGTGT
TCATGAAAAAACATGATAGTAACACTTCAAACAGCTCTTATGAAGACATC
TTGTAACATATAAGATGGGAGGAAGGGGGAGGGGAAGCACCGATTTTAGC
ATTCAGCTTTGGATTCTCCTTAAATCCACTAATCAAAGACTTCAGGGAGG
AAATGGAAAAATGGATGTTGGGCACTCAGTGCCTCCCAAGCCATCACTCT
TCATCAAGTACAACTTGATTGCTTCAAGTTGAAGGGTAAATGTCCCCTAA
GGAGCTTGTTTACCATGAGGATCACAGGATTTCTTGTTCCCAACAATTCT
AATCATGGAGATTTTGCTTTGAGCCTGGGAACCCATTAACTTCCCTTTGG
TGCTCCACCCCCGGGTCCCCCTTCTTAAATAAAATTTTTTTCCCCCTTTT
TTTTAAAAATCTAAATAACTTTTATAAATTTGTCCTGCAAGTTTGTAAAA
TTAAATGTTCTACTCTCTATAATCCAGTGTGGTTATTTTTTTTTATATTC
TTTTTTCTAATATTTATTAAAATGTTTTTCNATCTCCTGTATCTACTTGT
GACACTTTTCCCTTACCATCTTTCTTTCTACTATTCATTATTTTATTCTT
GTTT
NNNTTAACATTGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACAGAATGGCAGAGAAG
CACCTAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGAC
TTTTGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
TTTTTTTTCCCCCCCCCCCTCAACAGAGGAATGGATACAAAAAAAGAGGG
ACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGAT
ATTAGCCCAAAACCTAGGATACCCAAGATATAAGATATAATTTCCTAAAC
ACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTC
CTTAGAAGTGGGAACAAAACACCCTTGGAAGGAGTTACAGAGACAAAGTT
TGGAGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCATATCCAGGGA
TCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCATACACTAGCA
AGATTTTATTGAAAGGGACCCAAATGTAATTGTCTCTTGTGAGACTATGT
CCCGGGCCTATCTAAACCCAAAATGGGATGGTTCCCGTCCTCCTAATGTA
GTGGATCACAGGGTTCCCCATGGAGGAAGTTATTGAAAGTAATCCACGGA
GTTTAAGGGAATCTTGCTCCCCCTTATGGGGAAAATCTTTTTTATATAAA
CTCGTTCTCCCGGAGTCCTTTATTCTTCACTTTCTATTGTTTCAAAATAA
GGGCCCTATTCTCCCTTTCACTCGGTAGAAAGAGACTCCCTTGTCTCCCC
TCAAAATATTATATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_d21.b1 MSMg01no161_d21.b1 CHROMAT_FILE:
MSMg01no161_d21.b1 PHD_FILE: MSMg01no161_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:37 2005
         (417 letters)



>mm_chr2_19062009_19062825
          Length = 817

 Score =  746 bits (386), Expect = 0.0
 Identities = 398/402 (99%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattctgtattaatatagtctgtaatgtaatatagtagctgcaagtgcaatactatatt 75
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gaattcagtattaatatagtctgtaatgtaatatagtagctgcaagtgcaatactatatt 558

                                                                       
Query: 76  aaattgaaagtatttctcttaccacacactcagttgcctagtttactttctacacactat 135
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaattgaaagtatttctcttatcacacactcagttgcctagtttactttctacacactat 498

                                                                       
Query: 136 caaatttgatgtaataagaccagtatgttctttctggttttgctacactggggatgagag 195
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 497 caaatttgatgtaataagaccagtatgttctttctggttttgccacactggggatgggag 438

                                                                       
Query: 196 ccagggctttgcctgcaatagatgagtgttatgctgctgagccatatcctcatccctaac 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ccagggctttgcctgcaatagatgagtgttatgctgctgagccatatcctcatccctaac 378

                                                                       
Query: 256 atccctaaactaaataccctggatgctgcatccctaagatgatgtaatcaactagagaac 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atccctaaactaaataccctggatgctgcatccctaagatgatgtaatcaactagagaac 318

                                                                       
Query: 316 agccatggtaacagggctatagtggtttcttctatgaaagggccataatagaaactaact 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agccatggtaacagggctatagtggtttcttctatgaaagggccataatagaaactaact 258

                                                     
Query: 376 cacaatgattattagcctaagtctgagaaggcacagcattct 417
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cacaatgattattagcctaagtctgagaaggcacagcattct 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)