Query= MSMg01no161_i15.b1 MSMg01no161_i15.b1 CHROMAT_FILE:
MSMg01no161_i15.b1 PHD_FILE: MSMg01no161_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:15 2005
(421 letters)
>mm_chr2_153361021_153361842
Length = 822
Score = 658 bits (340), Expect = 0.0
Identities = 388/410 (94%), Gaps = 13/410 (3%)
Strand = Plus / Minus
Query: 16 gaatt-aagagcctgggaaagtgcccttagcttgtcccacttggctgcgtacccacagac 74
||||| |||||||| |||||||| | ||||||||||||||||||| ||||||||||||
Sbjct: 411 gaattcaagagcctaggaaagtgggcagagcttgtcccacttggctgtgtacccacagac 352
Query: 75 agcccaggtcaccgcagaagcggagacctaatctctcttctattctttgccgtgaagact 134
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 351 agcccaggtcaccgcagaagcggagacctaatctctcttctattctttgctgtgaagact 292
Query: 135 tccgtctactgaaggccctcgagtttaaaatctcagtcttggcatgtagcttagtaagca 194
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 291 tccgtctactgaaggccctcgagtttaaaatctcagtctgggcatgtagcttagtaagca 232
Query: 195 gagaattcctaagccacacacacctatactcctagtacttgaaaatggagtcagaaagaa 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gagaattcctaagccacacacacctatactcctagtacttgaaaatggagtcagaaagaa 172
Query: 255 gttcaaggtcatactcagatacatagtatgaggccagctagagacacttgagactttatg 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gttcaaggtcatactcagatacatagtatgaggccagctagagacacttgagactttatg 112
Query: 315 tcaaaaaaaaaaaaaaaaaaaaagccagcttagtgccacagaggctgagcagtat----c 370
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 111 tc----aaaaaaaaaaaaaaaaagccagcttagtgccacagaggctgagcagtatccggc 56
Query: 371 ttttttactgactactgatttcccacactgaatagctgtctgacacagaa 420
| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 ----tcactgactactgatttcccacactgaatagctgtctgacacagaa 10
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 822
Length adjustment: 9
Effective length of query: 412
Effective length of database: 813
Effective search space: 334956
Effective search space used: 334956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no161_i15.g1 MSMg01no161_i15.g1 CHROMAT_FILE:
MSMg01no161_i15.g1 PHD_FILE: MSMg01no161_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:15 2005
(381 letters)
>mm_chr2_153232310_153233091
Length = 782
Score = 690 bits (357), Expect = 0.0
Identities = 373/379 (98%), Gaps = 3/379 (0%)
Strand = Plus / Plus
Query: 5 ttttttttcc--aactcatgataatcaacttattcccagccattttcctgtaatgtttcc 62
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ttttttttcccaaactcatgataatcaacttattcccagccattttcctgtaatgtttcc 264
Query: 63 taaaagcttaacctaaatggctaaatgatcagaggggtgaaaagtattcaaatctgtgct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaaagcttaacctaaatggctaaatgatcagaggggtgaaaagtattcaaatctgtgct 324
Query: 123 agaggaagtggcctttgttttctttcgaggtaagagctcaagctttgcctagacttggat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaggaagtggcctttgttttctttcgaggtaagagctcaagctttgcctagacttggat 384
Query: 183 gtcagttactgagtgtttagaactaggttttttccccaggctcttagcaattgctaagga 242
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 385 gtcagttactgagtgtttagaactaggttttttccc-aggctcttagcaattgctaagga 443
Query: 243 gcttagatttggtcagttgtccaggcatcaagccagtaggacagggcacagcacacgttt 302
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcttagatttggtcagttggccaggcatcaagccagtaggacagggcacagcacacgttt 503
Query: 303 cattgtcacacagctgcagactaaatcttgtttgtttgatgactgaacttaggcaagacg 362
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 504 cattgtcacacagctgcagactaaatcttgcttggttgatgactgaacttaggcaagacg 563
Query: 363 tggcactcggtatacctct 381
|||||||||||||||||||
Sbjct: 564 tggcactcggtatacctct 582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 782
Length adjustment: 9
Effective length of query: 372
Effective length of database: 773
Effective search space: 287556
Effective search space used: 287556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
