Query= MSMg01no161_j15.b1 MSMg01no161_j15.b1 CHROMAT_FILE:
MSMg01no161_j15.b1 PHD_FILE: MSMg01no161_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:23 2005
(280 letters)
>mm_chr2_153361036_153361715
Length = 680
Score = 451 bits (233), Expect = e-131
Identities = 260/275 (94%), Gaps = 12/275 (4%)
Strand = Plus / Minus
Query: 1 gacctaatctctcttctattctttgccgtgaagacttccgtctactgaaggcccccgagt 60
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 312 gacctaatctctcttctattctttgctgtgaagacttccgtctactgaaggccctcgagt 253
Query: 61 ttaaaatctcagtcttggcatgtagcttagtaagcagagaattcctaagccacacacacc 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttaaaatctcagtctgggcatgtagcttagtaagcagagaattcctaagccacacacacc 193
Query: 121 tatactcctagtacttgaaaatggagtcagaaagaagttcaaggtcatactcagatacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tatactcctagtacttgaaaatggagtcagaaagaagttcaaggtcatactcagatacat 133
Query: 181 agtatgaggccagctag----attttcttgagactttatgtcaaaaaaaaaaaaaaaaaa 236
||||||||||||||||| | |||||||||||||||| ||||||||||||||
Sbjct: 132 agtatgaggccagctagagaca----cttgagactttatgtc----aaaaaaaaaaaaaa 81
Query: 237 aaagccagcttagtgccacagaggctgagcagtat 271
|||||||||||||||||||||||||||||||||||
Sbjct: 80 aaagccagcttagtgccacagaggctgagcagtat 46
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no161_j15.g1 MSMg01no161_j15.g1 CHROMAT_FILE:
MSMg01no161_j15.g1 PHD_FILE: MSMg01no161_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:23 2005
(357 letters)
>mm_chr2_153232372_153233127
Length = 756
Score = 601 bits (311), Expect = e-176
Identities = 320/323 (99%), Gaps = 1/323 (0%)
Strand = Plus / Plus
Query: 1 cctaaaagcttaacctaaatggctaaatgatcagaggggtgaaaagtattcaaatctgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctaaaagcttaacctaaatggctaaatgatcagaggggtgaaaagtattcaaatctgtg 260
Query: 61 ctagaggaagtggcctttgttttctttcgaggtaagagctcaagctttgcctagacttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagaggaagtggcctttgttttctttcgaggtaagagctcaagctttgcctagacttgg 320
Query: 121 atgtcagttactgagtgtttagaactaggttttttccccaggctcttagcaattgctaag 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 atgtcagttactgagtgtttagaactaggtttttt-cccaggctcttagcaattgctaag 379
Query: 181 gagcttagatttggtcagttggccaggcatcaagccagtaggacagggcacagcacacgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gagcttagatttggtcagttggccaggcatcaagccagtaggacagggcacagcacacgt 439
Query: 241 ttcattgtcacacagctgcagactaaatcttgtttgtttgatgactgaacttaggcaaga 300
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 440 ttcattgtcacacagctgcagactaaatcttgcttggttgatgactgaacttaggcaaga 499
Query: 301 cgtggcactcggtatacctctgt 323
|||||||||||||||||||||||
Sbjct: 500 cgtggcactcggtatacctctgt 522
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 756
Length adjustment: 9
Effective length of query: 348
Effective length of database: 747
Effective search space: 259956
Effective search space used: 259956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
