BAC Information

Click to search

BAC

Clone NameMSMg01-161N11
Chromosome2 (Build37)
Map Location 141,158,043 - 141,158,423
singlet/doubletsinglet
Overlap genenone
Upstream geneSel1l2, 2900006F19Rik, Flrt3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161N11.T7 (MSMg01no161_n11.b1)MSMg01-161N11.TJ (MSMg01no161_n11.g1)
ACCAG361142AG361143
length1,2761,205
length of high quality
(start - end)
427 (31 - 457)384 (70 - 453)
definitionCHROMAT_FILE: MSMg01no161_n11.b1 PHD_FILE: MSMg01no161_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:54 2005CHROMAT_FILE: MSMg01no161_n11.g1 PHD_FILE: MSMg01no161_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGTGCACTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAAT
TCTCACCTGAGGAATACCGAATGGCAGAGAAACACCTGAAAAAATGTTCA
ACATCCTTAATCATCAGGGAAATGCAAATCCCAACAACCCTGAGATTCCA
CCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAT
GCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAG
TGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAA
ATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATAT
ATCCAGAAGATGCCCCAACTGGCAAGAAGGACACATGCTCCACTATGTTC
ATATTTTTCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCC
CCTCTTTTTTTTTCCCCCCCCCCCGAAAATGTGGTACATCTACACAAAGA
AGAAGTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGTATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
AAACTCACACAATATGTACTCACTAATAAGTGGATATTAGCCCCAAACCT
AGGATACTCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGA
AGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTGGGAAC
AAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGTAGCTGAGATGAA
AGGATGGACCATGTATAGACTGCCATATCCAGGGATCCACCCCTTAATCA
GCATCCATACGCTGACACCATTGCTTACTCTATCAAGATTTTATTGGAAG
GACCCAAATGTTTCTGGTTCTTGTAAAAATATTTCGGGCCCTTACTACAC
AAAATGTATTGCTCCTCTCCTCTTAAAGTGTGGTTTTTTCGCTTCCCCTT
GGCTAAGCTATAATAATTACTCCCTTTCTTTTATGTACTGTTACTCTCTT
TTTTGGAATTCTCTTTTTTTTTATCATCTTTCCGTAATTTTTGTATTTTT
TCGTTTTTTTTATAAATAACTCTTGTCTCTCTCTCCTTTATTAAATTCTC
TTTCATGTGTTATATATTTTTTATCCTCTTATTCTTTCTTTTTATTACAT
CTTCTTTGATCTTATTCTTATTCTATTCTATACTATTTCATTCTCATCTA
TTTCATATCTCTTTTTCCACCTTCTT
NNNTTATGATGGAGCCGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTAAGTGATCATTACAGAGGTCAACTAATTTG
GGAAGGCTGTGTTAAGGCAAGTCATTGCCGGGGCAAGATAAATTCTTTAC
CTCAAGCATTGCAAGATGACAGCTCTGCAATGAAAGATGAGCTGAAAAGA
GAAAAGCAAAACAAAATTGTCTAAGGGTGTGTTATGCAATGAAAAAGTAA
GGAGAAATGAACACCATGAACCCAAATAGAATGTTTAGTTTTATGCTTAG
TTTTAGTAAATAATAGAAAGTGTTCAAGATCTGTGGATTGCCAAAATGGA
CTGATTTACAGGTAATGAACTGGGCTGGTGGGAAACGTAGCCAGGCTTGT
TTGTTTATACTCATCTCGGCTTCTCTCCATCTCCCTCCCTGCTGTTGATG
TTTTTTTTCCCCCCCCCCCTAGGGNCTTATTACCTACTTAAAGAAAAGAC
GAGTCAGATAATGACCTTTCGTGGATTCTATGGCTTGTATTAAGGGAGAG
AAATTCTAGTTTCTATGACAGACTTTACAGGAATGCCAGGAAGGAGGGTG
GGAGAAAAAAAAATAGAGACAATCCTTTTCAGGCCTAAAAATAGTTATCT
CTTGACATCTCTGGGGCATCACTTCCAGAACCATCTGTCTATCCCTCCAA
ATGCTATACACTGTGTAGGTCAGGTCTTTATTATAAAATGCCATATACTC
ATGAACATCTTCCTATGTACTGTAAACCACCTCCAGACTATTTATAGTTA
CCCATTAAATATTATTCTCCATGTTATTATGACTTTCTTTTATTTTCCTG
TGTATGCAACTATTTAAATAAAACTCTGTAATTTCCTGGTAATTACAAGT
TTTATTCTTAATAATTAATTCGTTTTTCACTCCATTAATTTCTTTTTTTT
TTTTTTTCTTTATTCTTCCTTTATTTTATTCCTTCTTTCTATTACTTTTA
TTATTCTTTATTCCTCTCTCTTTTTTTCTTTTCAATTCTTTTTTTCTTTA
TTATCTTACTTTTATTTTTTTATATCTTTTCCTATCTCTTCTCTTATATC
TCATTATTTCATTTATTCTTTCTCCCTTTTTATTTTTTTTTTTTATTCTT
TTTTATCCAATTTTACCTTTTTATTTTTCGATATCTCTCTCTTTCACTCA
CTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_n11.g1 MSMg01no161_n11.g1 CHROMAT_FILE:
MSMg01no161_n11.g1 PHD_FILE: MSMg01no161_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:55 2005
         (384 letters)



>mm_chr2_141157843_141158626
          Length = 784

 Score =  714 bits (369), Expect = 0.0
 Identities = 378/381 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagtgatcattacagaggtcaactaatttgggaaggctgtgttaaggcaagtcattgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 taagtgatcattacagaggtcaactaatttgggaaggctgtgttaaggcaagtcattgca 260

                                                                       
Query: 61  ggggcaagataaattctttacctcaagcattgcaagatgacagctctgcaatgaaagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggcaagataaattctttacctcaagcattgcaagatgacagctctgcaatgaaagatg 320

                                                                       
Query: 121 agctgaaaagagaaaagcaaaacaaaattgtctaagggtgtgttatgcaatgaaaaagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctgaaaagagaaaagcaaaacaaaattgtctaagggtgtgttatgcaatgaaaaagta 380

                                                                       
Query: 181 aggagaaatgaacaccatgaacccaaatagaatgtttagttttatgcttagttttagtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggagaaatgaacaccatgaacccaaatagaatgtttagttttatgcttagttttagtaa 440

                                                                       
Query: 241 ataatagaaagtgttcaagatctgtggattgccaaaatggactgatttacaggtaatgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataatagaaagtgttcaagatctgtggattgccaaaatggactgatttacaggtaatgaa 500

                                                                       
Query: 301 ctgggctggtgggaaacgtagccaggcttgtttgtttatactcatctcggcttctctcca 360
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 501 ctgggctggtgggaaacgtagccaggcttgtttgcatatactcatctcggcttctctcca 560

                                
Query: 361 tctccctccctgctgttgatg 381
           |||||||||||||||||||||
Sbjct: 561 tctccctccctgctgttgatg 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)