BAC Information

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BAC

Clone NameMSMg01-162C12
Chromosome2 (Build37)
Map Location 119,909,396 - 119,909,657
singlet/doubletsinglet
Overlap geneSpnb5
Upstream geneCasc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b
Downstream geneEhd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162C12.T7 (MSMg01no162_c12.b1)MSMg01-162C12.TJ (MSMg01no162_c12.g1)
ACCAG361368AG361369
length712711
length of high quality
(start - end)
268 (45 - 312)263 (75 - 337)
definitionCHROMAT_FILE: MSMg01no162_c12.b1 PHD_FILE: MSMg01no162_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:27 2005CHROMAT_FILE: MSMg01no162_c12.g1 PHD_FILE: MSMg01no162_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAGACTCCTGTCTGCTGCTTCTGTCAAATGCTGGGGTTAAGGGTG
TAGGATACAACATTTGCCCCTAGCATATGTGTTTAATCCTAGTACTCAGG
AGACAGAAGCCTGTTCAAGGTCAGCCTGATCTACATAGTGAATGCCAGAG
TAGCCAAGCTACATGGTGAGACTCTGACTCAGACAAACCAAAAAAAGGTA
GAAAATCATAAACGTGCCTAGCCCTGGTCCCTGGACTTCACATGTATATC
CATGGGGGTTGGTTTATCCACACAGTTGTACATGCCTACATTGTACATGT
GACTTTTTATTTTTTCCCCCCCCCCCTGCGTTAACAAGCTGGCTTAGTGA
GTAAACAGGCTTCGCCCCCAAACTTTGTGACTTGAGTTTAATCCCCAGAA
ACAGTGCATAATCTTGTCTTCTGACTGTTTTCTGTGTTATGGCACATGCA
CCCTTGTATATCATGCACATACAATAATTAAAAATAAAAGTCTATACTGA
TTTGTAGAACTGATGATCATGAGATGGTGGCAGTATATGCTTTCCTGTAA
TGTTTGTGTGTGTTGTTGAATTGTCCCTCTTTCATGTCTTCTTTTTTTTC
CCCCTATCGTTTTTACACTCCCCACTTACTTCTTATTTTATTTATTTTTT
CTTTTTTTCCCN
ATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCGGCTTTGGTGTGGCATGATTCAG
TAGAGACAATGGAGCCAGAGGGTAACTGGCAGGTTCTTTAGACTCTGATG
TGTGCTCATCATGAGTTAATCAGTCCTCCTCCTAAGGAAGAAGCTCTAGA
CCAGAGGTTTCACCCTTATGACCCACAGAGCCACTCACAGTTTGCTTAGA
TGCAGATGATAGCACCTGGGCCTAGGCCTGGGCTTGGAGAATCTGGCTGG
GTGGGGCTGGGGAATTCTAAACTTCTGATAGCTCAGCTGGAGGTGAAACA
CTGTTTTTTTTACTCCCGTCTGACCCCCCGATCCAGTGGTTCAGGCACCC
CCTTGAGGTGCTCCCCCGCTAGAAAAAGAATACAGGCACTGGCTGTGTCT
ATTTAGCTCACTCAAGAACTCTCATTTTTTGCTCCACCTTTGAGGGTTTT
CCACCTTGTGGCCCAATCTAGTATATCTCCCCTTATATAATGTTCCCTTA
TACCATTGTCCCCGCCTTTATAAAGCCTTCTTTCCCCTGCCATTGTTCTT
TGTCCACTCTCCTTGTATTATTTCTTGCTGTAAGAATTTGGATTCTTCCC
CTTTTCCTGTTTCCCTTATACCCCGCCTCCCTCATGCATATTTTGCCTTC
CTGGCTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_c12.g1 MSMg01no162_c12.g1 CHROMAT_FILE:
MSMg01no162_c12.g1 PHD_FILE: MSMg01no162_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:28 2005
         (263 letters)



>mm_chr2_119909196_119909858
          Length = 663

 Score =  499 bits (258), Expect = e-146
 Identities = 261/262 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcggctttggtgtggcatgattcagtagagacaatggagccagagggtaactggcaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ttcggctttggtgtggcatgattcagtagagacaatggagccagagggtaactggcaggt 403

                                                                       
Query: 61  tctttagactctgatgtgtgctcatcatgagttaatcagtcctcctcctaaggaagaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tctttagactctgatgtgtgctcatcatgagttaatcagtcctcctcctaaggaagaagc 343

                                                                       
Query: 121 tctagaccagaggtttcacccttatgacccacagagccactcacagtttgcttagatgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tctagaccagaggtttcacccttatgacccacagagccactcacagtttgcttagatgca 283

                                                                       
Query: 181 gatgatagcacctgggcctaggcctgggcttggagaatctggctgggtggggctggggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gatgatagcacctgggcctaggcctgggcttggagaatctggctgggtggggctggggaa 223

                                 
Query: 241 ttctaaacttctgatagctcag 262
            |||||||||||||||||||||
Sbjct: 222 ctctaaacttctgatagctcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space:   166116
Effective search space used:   166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)