BAC Information

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BAC

Clone NameMSMg01-163E15
Chromosome2 (Build37)
Map Location 155,560,910 - 155,717,697
singlet/doubletdoublet
Overlap geneProcr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik
Upstream geneLOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2
Downstream geneGdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163E15.T7 (MSMg01no163_e15.b1)MSMg01-163E15.TJ (MSMg01no163_e15.g1)
ACCAG362149AG362150
length716710
length of high quality
(start - end)		313 (49 - 361)282 (80 - 361)
definitionCHROMAT_FILE: MSMg01no163_e15.b1 PHD_FILE: MSMg01no163_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:51 2005CHROMAT_FILE: MSMg01no163_e15.g1 PHD_FILE: MSMg01no163_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,560,910 - 155,561,218)(155,717,416 - 155,717,697)
sequence
NCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTTTTCCGAGACCTGAAGGTCAGGAGGTTCCAGCAGTTTCTC
TCAACTCCCAGAGCAGAGTTGTCCGCTACATACTTTCAGCCTGCCAAGAA
ATAACTACTTAGTTCATGAGAAGTTCTCCATCTGCTGCCTTGTAGAAATG
CTTGCATTTCCCCTGTGCCCAGCGTGTCCAAACACTCTCTCTCCAGAGCC
CTAGACATGTTTTCCTAACGCTCATGTTCCATGTGACGTCAAACTTACTA
ATGACTCTACAGCTGAGCTGCATTCTTAAAAAGACAGTTGAAATGATCTG
ATCTATTATATTTTTTGATCCGCTCCCCCCCATTGGACATTGAGCCTACG
GTCTTGAGCATGCGCCACCCAAACACTCCATTCTGAGCTTTATCCTCAGC
CCTACAGTATTCTGGGTTGTTTTGTTTTGTTTTGTTTAGGGAGGGTAAAT
AAATGCAAAATGACTGAATAAAATTCAGAACTTTTCATGCCATTTGCTGT
CATTGTAGCAATTCTTTCACAGTAAAATTTCTTTTTATTGACCAAAAATT
GCAGCATTGACTGAAAAGCGTCTCACAAATTATTAAACAAAAGATAATAT
TTTTTTATAATAATCTAAGAATATCCCCATGCTTCCCCCCTCCCCCCTTT
ATTTCCCCCCTTTTCN

NCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTACCTCACTGTTGCTGTT
GATGAATTAGCCTCCTATGACACTTAAGCATCAAAACACTGCATCTTTTC
AGGTGAGAGGCTGACAAGAACAAATTAATTTATTTAAAAAGTACTATTGA
ACCTTACCCAGTGCATTTCTGCTGTGCAGTGTGCTCTCTATCCCGTGCCC
AGCCTTTTCACGGCCTGTTTCATTATCATCTCCAAGTCTCATTCATATCT
TAGGTACTGTCTGGGTTCAGAGGTTAAAAGTTAGAATGAAATTGCCAATA
GATCCATTTGATTTTTATAGCCCCCCCCCGCCTGGAAAGCTGCAGGCTCT
GGGTCTGGAGAGATGCCCCCGAAGTTAACAGCAGATACAGCTTAGTCAGA
GGATCTGAGTTTGGTCCCCAGCATTCAACTTGGGCTGCTCATACCTTCCT
CTAACTCAGCTCCAGGGAACCCAGTGCCTTTGATCTCCAAGGGCATTAAG
TTCATATGCACATACCCAGACACACACACACTTAAAAATAAATCTTAAAT
TAAAAAAAGCTGGATGTTCACCAGACATTTATTCTTTTATGAACAGATTT
TGAAGTTGTCCATTCTATTACTTACATCTTTACATTCTTTCCTGCTGGAC
AGTTTTTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_e15.b1 MSMg01no163_e15.b1 CHROMAT_FILE:
MSMg01no163_e15.b1 PHD_FILE: MSMg01no163_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:51 2005
         (313 letters)



>mm_chr2_155560707_155561419
          Length = 713

 Score =  582 bits (301), Expect = e-171
 Identities = 307/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttttccgagacctgaaggtcaggaggttccagcagtttctctcaactcccag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttttccgagacctgaaggtcaggaggttccagcagtttctctcaactcccag 263

                                                                       
Query: 64  agcagagttgtccgctacatactttcagcctgccaagaaataactacttagttcatgaga 123
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agcagagttgtcagctacatactttcagcctgccaagaaataactacttagttcatgaga 323

                                                                       
Query: 124 agttctccatctgctgccttgtagaaatgcttgcatttcccctgtgcccagcgtgtccaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agttctccatctgctgccttgtagaaatgcttgcatttcccctgtgcccagcgtgtccaa 383

                                                                       
Query: 184 acactctctctccagagccctagacatgttttcctaacgctcatgttccatgtgacgtca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acactctctctccagagccctagacatgttttcctaacgctcatgttccatgtgacgtca 443

                                                                       
Query: 244 aacttactaatgactctacagctgagctgcattcttaaaaagacagttgaaatgatctga 303
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 aacttactaatgactctacagctgagctgcagtcttaaaaagacagttgaaatgatctga 503

                    
Query: 304 tctattata 312
           |||||||||
Sbjct: 504 tctattata 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no163_e15.g1 MSMg01no163_e15.g1 CHROMAT_FILE:
MSMg01no163_e15.g1 PHD_FILE: MSMg01no163_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:52 2005
         (282 letters)



>mm_chr2_155717216_155717897
          Length = 682

 Score =  545 bits (282), Expect = e-160
 Identities = 282/282 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattacctcactgttgctgttgatgaattagcctcctatgacacttaagcatcaaaacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cattacctcactgttgctgttgatgaattagcctcctatgacacttaagcatcaaaacac 423

                                                                       
Query: 61  tgcatcttttcaggtgagaggctgacaagaacaaattaatttatttaaaaagtactattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgcatcttttcaggtgagaggctgacaagaacaaattaatttatttaaaaagtactattg 363

                                                                       
Query: 121 aaccttacccagtgcatttctgctgtgcagtgtgctctctatcccgtgcccagccttttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aaccttacccagtgcatttctgctgtgcagtgtgctctctatcccgtgcccagccttttc 303

                                                                       
Query: 181 acggcctgtttcattatcatctccaagtctcattcatatcttaggtactgtctgggttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 acggcctgtttcattatcatctccaagtctcattcatatcttaggtactgtctgggttca 243

                                                     
Query: 241 gaggttaaaagttagaatgaaattgccaatagatccatttga 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gaggttaaaagttagaatgaaattgccaatagatccatttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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