BAC Information

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BAC

Clone NameMSMg01-163H01
Chromosome2 (Build37)
Map Location 179,576,573 - 179,576,851
singlet/doubletsinglet
Overlap geneCdh4
Upstream geneLOC100039368, LOC665264, LOC100043168, LOC100039413
Downstream geneTaf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163H01.T7 (MSMg01no163_h01.b1)MSMg01-163H01.TJ (MSMg01no163_h01.g1)
ACCAG362242AG362243
length742735
length of high quality
(start - end)
314 (47 - 360)283 (76 - 358)
definitionCHROMAT_FILE: MSMg01no163_h01.b1 PHD_FILE: MSMg01no163_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:02 2005CHROMAT_FILE: MSMg01no163_h01.g1 PHD_FILE: MSMg01no163_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA
TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAC
TTTCTCCTCTATATAGTTTCACCCCTCTCTGGTTTTATGTGAAGTTCCTT
GATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTC
GCATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAA
ATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAA
GTAACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATT
GGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATT
GCTCTGTAGTAAAGCTTTAGGTCTGGCATGGTGATTCCGCCAGAAGTTAT
TTTATCCTTGAGAAGACTTTTTGCTATCCTAGGTTTTTTGTT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCCTCCTTTATCTCCCAGGTC
CTGGGATGACAGGCAGGCACCATTAAGTCCAGTTTACACAGTCCTGGGAA
CCCGCGGCTTCATGCACCCTAGCCAAACACTCCAAAACTGAACTACATCC
CCAGCCCTCAATATTTCAAGTTCATGTCAAGCTATGATGGCATAGTAAGC
CAGGCCAGCAAGAGATACAGTGGCAGAGGGAAGTCCCTATCCTTACAACA
CACAGGATCTGCTGGGTGGGGTGGGGTGGGGGCACTTCTTTGCATGAAAC
AAGACATTTTTTTTTTGCCCCCGCCCCACAGTCAGAGAACAGATTTTCTT
TCCAGTTTTATTTGTACACCGAAAAGAAAGGTGGACCCAGAAAACCCCCA
ATTCCTAAAAAATTCAGCTTTCTTTCCCCAATTTTAAGGATAAGTGGATT
TAAAAATTTTAATTAGGACTCCTAAAGCAGGAGGAGGGGCTATCTCTGAC
TCTGTTGCCTGCCTTTGGGTCCCTTTCCCTTAATTGGGCTGCCTTGTCTA
GCCTCAATAGAAGATGATGTGCCTAATTTTACTGCAACTTGATACTCCAA
GGCTGGTTGATAACCATGGGACGCTTCCCCTTTTCTGAGGAAAAGGGGCA
AAGGGATGGATGGAGGGAAAGGAGGTGAGAGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_h01.g1 MSMg01no163_h01.g1 CHROMAT_FILE:
MSMg01no163_h01.g1 PHD_FILE: MSMg01no163_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:02 2005
         (283 letters)



>mm_chr2_179576241_179576921
          Length = 681

 Score =  501 bits (259), Expect = e-146
 Identities = 275/281 (97%), Gaps = 2/281 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgatcctcctttatctcccaggtcctgggatgacaggcaggcaccattaagtccagttt 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ctgatcctcctttatctaccaggtcctgggatgacaggcaggcaccattaagtccagttt 552

                                                                       
Query: 61  acacagtcctgggaacccgcggcttcatgcaccctagccaaacactccaaaactgaacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 acacagtcctgggaacccgcggcttcatgcaccctagccaaacactccaaaactgaacta 492

                                                                       
Query: 121 catccccagccctcaatatttcaagttcatgtcaagctatgatggcatagtaagccaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 catccccagccctcaatatttcaagttcatgtcaagctatgatggcatagtaagccaggc 432

                                                                       
Query: 181 cagcaagagatacagtggcagagggaagtccctatccttacaacacacaggatctgctgg 240
           |||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||
Sbjct: 431 cagcaagagatacagtggcagagggaagtccccattcttacaacacgcaggatctgctgg 372

                                                    
Query: 241 gtggggtggggtgggggcacttctttgcatgaaacaagaca 281
           |||||||||||  ||||||||||||||||||||||||||||
Sbjct: 371 gtggggtgggg--ggggcacttctttgcatgaaacaagaca 333


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 681
Length adjustment: 9
Effective length of query: 274
Effective length of database: 672
Effective search space:   184128
Effective search space used:   184128
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)