BAC Information

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BAC

Clone NameMSMg01-163K23
Chromosome2 (Build37)
Map Location 3,983,908 - 3,984,195
singlet/doubletsinglet
Overlap genenone
Upstream gene9630050M13Rik, Nmt2, Rpp38, Acbd7, Olah, Meig1, Dclre1c, Suv39h2, Hspa14, Armetl1, LOC100040219, LOC666495, 3110001A13Rik, LOC100040257, LOC100040163
Downstream geneLOC666944, 1700080N15Rik, Frmd4a, EG634452, Prpf18, LOC623483, E130319B15Rik, LOC666973, Sephs1, Phyh, LOC381346, LOC100040250, LOC100040426, 1110017I16Rik, Mcm10, Optn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163K23.T7 (MSMg01no163_k23.b1)MSMg01-163K23.TJ (MSMg01no163_k23.g1)
ACCAG362409AG362410
length726729
length of high quality
(start - end)
320 (45 - 364)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no163_k23.b1 PHD_FILE: MSMg01no163_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:20 2005CHROMAT_FILE: MSMg01no163_k23.g1 PHD_FILE: MSMg01no163_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCCTTCTTTTCCGTGGTGAAAAGAACCTGCAAAAGGTGTTGGCA
ATCATCCTAAGTGGGCTAATGAGAGTCTACCAGGCTGGTTAGTCTAGCCG
GATTTTCTGAAAAAGTAGGATGGTTAGATTTTCAGTTATAGAGATCAGAT
GACAAGAATGGCCAGTACTGAAGAGTCTAGAGAGTGTGAGGGTCTGCAGG
TAGCCCCACTGTGCACAAAGGAAAGGCAGACATAGTGTCCGGAACCTCAT
CTGCAAAGGGACACTGTGCGGTGCCAGCTTTGGGTCCCAGCTGCTGGTCC
TCTGACTGCTCCTTTTTCAGGCCCGCGCCTCCAGATGTCATGGAGATGCA
GGAACCGGAGGGGGCAAGCCATAGGGAGGAAGAGGAGGAGGTTCTGGCCA
CTCAGGAGGCCCCTCAATCTCAAGATAGTTCTTGGGGGAAGCTGAAGGCC
GAGGCAAAGGCTCCATTTCATTTCAGGAGGAACCTTCAGTTTCACTTTTG
GTCTGTGGAGAGCCAGGGCTTGGGAGCCTGGCTTCTGCTGCAGGATCCAC
GGCTTGACCCATGGGGGTGGATTCTGTACGAGATCTTGTCCACGGTTTCG
TATGGCTGCTAGTCCATGTGAGACCCCAGTTCATCCTGAAAAATACGGCC
CTAACTTCACGATTTCCGTTTGTTTN
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATGGCTCACTCTCCCTTCCACTCC
ATTATTTTGCCTTAAATTCCATGGTTCACTCTGAGGAGCAGAGAGGCTGT
GGAAGACTCAAAAGCTTGGAAAAGGGAGAAGAAAAGGCATGGTCAGTACC
TTGAAAGGCTGCTGCATTGCCAGCATGGTGTGATTTCAGTGAACCAGGCC
AGGGAACTGGAAACTGGAAACTGGGATCCCTAACGTCTTTTTCTATGGTT
GGAAAGACAGGTTTTAAACCTCAACCAAGGAGGACTTGGAGACAGGAAGG
GCCAAAGAGTCTCTTTCTTTATCCCCCCCCCCACTTAATACATTTGTGTC
AATGGGATACTGTCCAGCTCACCTCTATGCTAAGTAGCACCTACAGCCTC
TACAGATCAGCCAGGCAGGCAGGTCAAGGCACACCAGTGCTGTTCTCAGG
GGCTACTGGATACTTCCTCTCCCAGGCCCCTCTTGGGAGAACTATTTTGG
GTTTCCATGTGAATCCTGAATCAGGTCTTATCTCTGCTCCTGGACTTAGA
AGTGGAATTTTAATTTTCAGATTAACATCGCTTCTTTTTCAGTGTCTCAG
AACATTCTAGAAGGTCTGCTCTAGGAGGTCTTTGGTTAAGTTTCCTCCTG
TCCTAGTCAAACCTTCAAACTCNGGTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_k23.g1 MSMg01no163_k23.g1 CHROMAT_FILE:
MSMg01no163_k23.g1 PHD_FILE: MSMg01no163_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:20 2005
         (288 letters)



>mm_chr2_3983708_3984395
          Length = 688

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catggctcactctcccttccactccattattttgccttaaattccatggttcactctgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 catggctcactctcccttccactccattattttgccttaaattccatggttcactctgag 429

                                                                       
Query: 61  gagcagagaggctgtggaagactcaaaagcttggaaaagggagaagaaaaggcatggtca 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 428 gagcagagaggctgtggaagactcaaaagcttggaaaagggagaaggaaaggcatggtca 369

                                                                       
Query: 121 gtaccttgaaaggctgctgcattgccagcatggtgtgatttcagtgaaccaggccaggga 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gtactttgaaaggctgctgcattgccagcatggtgtgatttcagtgaaccaggccaggga 309

                                                                       
Query: 181 actggaaactggaaactgggatccctaacgtctttttctatggttggaaagacaggtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 actggaaactggaaactgggatccctaacgtctttttctatggttggaaagacaggtttt 249

                                                           
Query: 241 aaacctcaaccaaggaggacttggagacaggaagggccaaagagtctc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aaacctcaaccaaggaggacttggagacaggaagggccaaagagtctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)