Query= MSMg01no163_n16.b1 MSMg01no163_n16.b1 CHROMAT_FILE:
MSMg01no163_n16.b1 PHD_FILE: MSMg01no163_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:32 2005
(315 letters)
>mm_chr2_63582632_63583346
Length = 715
Score = 594 bits (307), Expect = e-174
Identities = 310/311 (99%)
Strand = Plus / Minus
Query: 5 gaattcactttgtctcagaggctggcctggatatgtggaccctgaagcctaaagttatta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattcactttgtctcagaggctggcctggatatgtggaccctgaagcctaaagttatta 456
Query: 65 agtgatgtggttatagggatccactgtcacatatagatcacatattactttgaacacttc 124
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 agtgctgtggttatagggatccactgtcacatatagatcacatattactttgaacacttc 396
Query: 125 aaatcaatagctttctatttttttcattgcaatttatttaagagaaaaataagattttcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aaatcaatagctttctatttttttcattgcaatttatttaagagaaaaataagattttcc 336
Query: 185 aacatactggattttgtttaataccaacattttccataatttgaattggcttttgtttta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aacatactggattttgtttaataccaacattttccataatttgaattggcttttgtttta 276
Query: 245 acttctgcagagactcaaaatgtcaggcagtgggtttttctgttgcatcattctgaggaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 acttctgcagagactcaaaatgtcaggcagtgggtttttctgttgcatcattctgaggaa 216
Query: 305 cataatatcta 315
|||||||||||
Sbjct: 215 cataatatcta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no163_n16.g1 MSMg01no163_n16.g1 CHROMAT_FILE:
MSMg01no163_n16.g1 PHD_FILE: MSMg01no163_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:32 2005
(282 letters)
>mm_chr2_63454280_63454961
Length = 682
Score = 414 bits (214), Expect = e-120
Identities = 251/280 (89%), Gaps = 26/280 (9%)
Strand = Plus / Plus
Query: 1 agagtatgggagcttgcacgttagtaatgaagacttaagcatattgtcccactgactttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagtatgggagcttgcacgttagtaatgaagacttaagcatattgtcccactgactttc 260
Query: 61 cacagaggtgagctacagagaatgcacatgtgcatcagccacagccctaatccagatatg 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 cacagaggtgagctacagagaatgcacatgtgcatcagccacagtcctaatccag----- 315
Query: 121 tgggataacgcggtggatcagctgtctgtcataaagctctgcaaagcagctttaagtcct 180
|||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ---------------------ctgtctgtcataaagctctgcaaagcagctttaagtcct 354
Query: 181 ggtttggagaatgagtatgaacagtgaccacattgctggagtcagggacataagttagct 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ggtttggagaatgagtatgaatagtgaccacattgctggagtcagggacataagttagct 414
Query: 241 caaagaatttgtggctctgatattttacatgcagagatac 280
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 415 caaagaatttgtagctctgatattttacatgcagagatac 454
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
