BAC Information

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BAC

Clone NameMSMg01-164E15
Chromosome2 (Build37)
Map Location 49,456,291 - 49,456,574
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666, Epc2
Downstream geneKif5c, 2310010M24Rik, Lypd6, 2010311D03Rik, LOC666781
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164E15.T7 (MSMg01no164_e15.b1)MSMg01-164E15.TJ (MSMg01no164_e15.g1)
ACCAG362814AG362815
length809758
length of high quality
(start - end)
123 (46 - 168)284 (73 - 356)
definitionCHROMAT_FILE: MSMg01no164_e15.b1 PHD_FILE: MSMg01no164_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:06 2005CHROMAT_FILE: MSMg01no164_e15.g1 PHD_FILE: MSMg01no164_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
GAATTCTCCAAACTCACTCTGTGGGTTCCATTTCATATAATAACCTGTCC
TCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCC
TCTCCTCTCCTCTCCTGCTCCCTGCTCCCCGCTCCGCCGCTCTGGTCTGC
TCTCCTCTCGTGGCGGCTGCGCCCTCCTCTGGTCGGGCCGCGCCTGGCGG
GTGCGGCCGTGGCGGGGCGGGGCGGCGCGCTCCTGGGTGGTTTGGGGGGC
GGTGTCGGGGCGGGGGTTTTGGTTTTGTGGTGGCGGGGTGGGCGTTGTCT
GGCGTGTTTTTTTTTTTTTTCCCCCCCCCCCCGGTGGGGGGTTTTGGGGG
GGGTGGTGTGGGGGGGCCCCCCGGGGCGGAAAAAAGAGTTTGGTGGGGGG
GGGGGGGGGGGGCGTGGTGTGTTTGTTGGCGGGGGGGGTGGTGCGGGGGG
GTGGGGGCGTTTGTTGTGGGCCGTGTGGGGGTTGGTGGGTGGTGCTGGGG
TTGTGGTGCGGGTGGTTTGTGTTGGGCGGGTGCTGGCTAGGGGGGGGTGG
GTTGGGGGTGGGGGGGGGGGGGGGGTGGGTGTGGGGTTTTGTGGTGGGGG
TGCGTGCGGGGGTGTGTGGTGTGCGTGCGGTGGGGTTGGGGTGTGTTTCT
GGGGGCTCGTGGCGTTTTTGTTGTGTTCGTGTGGGGTGGTTGGGTGGCCG
GGGGCTGGTGGTGTGGGTTGTAGGGCTCTGTGGTTGGGTGAGGTGTGGGG
TGGTGGTGG
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTATTAAAGGTATTGACTCTTTGTTAT
GTACGCTACAAAAAGAAAACCTTCTTCAGCCGAGTTTTAAAATTTATTCT
CTAGTATGGACTTTGATGTATAGGACTCCATTTTTAATGAGGTGTATATA
TTGCTATTTTCCTTTATGACTGCTGTCTTGAGTATGATATTGCTTAAATG
GTGATATATTTCTATAGCTTATACTTCAGACCGAGGCTGTTGGAGAAAAG
GGTGTATTTTGGTTCAAAGTCATATTCATTCTTCTACTCTATGCTCCATC
CTGTGTAATTTTATCTCCCACCCCCCCCTTGCTTGTTTAAATGGTTCCCA
GTGGTTATTCCCCCCACTACTCAATAAATGAAAGCCTTTCCATTGAATGT
CCACTAAACCAGTGACACGCTTATACTAACTGGAAAGTGGTTTCCATTTT
CTCATCCACTGTAGAGATGTCTATTACTGAGGGATATCCACATAAGTGAT
AACTAAAAGTAGTTTCCTTGCCAATGACCATGACGCACCCTTTATACGTT
CATTCTTCTTCATTTTAAACCTTAAATCGTCTACTGTCTTTTCTTTATCT
ACTTTTCTTTCTTCCCTCTGTTTTATTTCTATCCCTCGTTTTCATTAAGT
CCGCAAAACCCTATTACTCCACTCTTCTTATTTTTTCTTTTATCCTTGTT
TAATACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_e15.g1 MSMg01no164_e15.g1 CHROMAT_FILE:
MSMg01no164_e15.g1 PHD_FILE: MSMg01no164_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:06 2005
         (284 letters)



>mm_chr2_49456091_49456774
          Length = 684

 Score =  542 bits (280), Expect = e-158
 Identities = 283/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttattaaaggtattgactctttgttatgtacgctacaaaaagaaaaccttcttcagccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttattaaaggtattgactctttgttatgtacgctacaaaaagaaaaccttcttcagccg 260

                                                                       
Query: 61  agttttaaaatttattctctagtatggactttgatgtataggactccatttttaatgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttttaaaatttattctctagtatggactttgatgtataggactccatttttaatgagg 320

                                                                       
Query: 121 tgtatatattgctattttcctttatgactgctgtcttgagtatgatattgcttaaatggt 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtatatattgctattttcctttgtgactgctgtcttgagtatgatattgcttaaatggt 380

                                                                       
Query: 181 gatatatttctatagcttatacttcagaccgaggctgttggagaaaagggtgtattttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatatatttctatagcttatacttcagaccgaggctgttggagaaaagggtgtattttgg 440

                                                       
Query: 241 ttcaaagtcatattcattcttctactctatgctccatcctgtgt 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcaaagtcatattcattcttctactctatgctccatcctgtgt 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)