BAC Information

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BAC

Clone NameMSMg01-164G24
Chromosome2 (Build37)
Map Location 108,818,765 - 108,819,111
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043078, LOC668790, LOC623003, LOC100043423, LOC623031
Downstream geneMett5d1, Kif18a, Bdnf, LOC100043427, Lin7c, Lgr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164G24.T7 (MSMg01no164_g24.b1)MSMg01-164G24.TJ (MSMg01no164_g24.g1)
ACCAG362916AG362917
length741739
length of high quality
(start - end)
320 (43 - 362)637 (74 - 710)
definitionCHROMAT_FILE: MSMg01no164_g24.b1 PHD_FILE: MSMg01no164_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:17 2005CHROMAT_FILE: MSMg01no164_g24.g1 PHD_FILE: MSMg01no164_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGAAAATACCTGAGTAAGAACGATGTTGGGGCAATCAGATATATTTT
GATGTTATGCATGACAAAAAGAAGTGGAAGACTCAATGTACACACACACA
CACACGCACACACACACACACACACACACACACAGAGAGAGAGAGAGAGA
GAGAGAGAGTCTTAAGGACATGTACAATTAATTCGAAGCATAGGTAATAT
AGGCTATATTCAGAATCTGGTAATAAAGAAGAGCATGAATTCGAGAAAAT
GAAGTACTTGAGAACCAAAAGCATTTGGTGGACTCTTCAGGCATGCTCAT
TAAGTAAGTGTATGTTAATGCGCCCCCCAAAATCTTAACATTCAAGTCAG
TCAGTCTCTTATTGCTCAAACCTGAACTCCTCCTGTTTAGAAAATAACAG
AGTCCCTTAATAGGCGATATAACATTAAACTAAACTGATGAAGGGAAGCT
GAGAGATTCCAAATCAAATCTGGTTGTTTACCAACTACACAGGTCAGGTA
ACAAATCCCCCCCCCACACACACACCCTTTTTGTGGTCTTTAGTACAAAC
TTTATTTTTTTATTGAATATTTTATTTACTTACATTTCTTTTTTTTCTAT
AGAAGCCATTTATTTGAAATACCAACTATATCAAATGTTATCCCCTTACC
CAGTTTCCTCTCTGGAAGCCCCCCTCCCATACACTCTCCTC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAATTGTACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTG
GATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTA
AACACATGAACCTCAAGAAGAATGAAGACTGAAGTGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_g24.b1 MSMg01no164_g24.b1 CHROMAT_FILE:
MSMg01no164_g24.b1 PHD_FILE: MSMg01no164_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:17 2005
         (320 letters)



>mm_chr2_108818398_108819117
          Length = 720

 Score =  470 bits (243), Expect = e-137
 Identities = 305/351 (86%), Gaps = 40/351 (11%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccagaaaatacctgagtaagaacgatgttggggcaatcagatatattttgatgt 63
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 714 ggaattccagaaaatacctgagtaagaacggtgttggggcaatcagatatattttgatgt 655

                                                                       
Query: 64  tatgcatgacaaaaagaagtggaagactcaatgtacacacacacacacacgcacacacac 123
           ||||||||||||||||||||||||||||||||||    |||||||| |||||||||||||
Sbjct: 654 tatgcatgacaaaaagaagtggaagactcaatgt----acacacacgcacgcacacacac 599

                                                                       
Query: 124 acacacacacacacacacagaga------------------------------------g 147
           ||||||||||||||| | |||||                                    |
Sbjct: 598 acacacacacacacagagagagagagagagagagagagagagagagagagagagagagcg 539

                                                                       
Query: 148 agagagagagagagagagagtcttaaggacatgtacaattaattcgaagcataggtaata 207
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 538 agagagagagagagagagagtcttaaggacatgtacaatttattcgaagcataggtaata 479

                                                                       
Query: 208 taggctatattcagaatctggtaataaagaagagcatgaattcgagaaaatgaagtactt 267
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 taggctatattcagaatctggtaataaagaagagcatgaattcgagaaaatgaagtactt 419

                                                              
Query: 268 gagaaccaaaagcatttggtggactcttcaggcatgctcattaagtaagtg 318
           ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 418 gagaaccaaaagcttttggtggactcttcaggcatgctcattaagtaagtg 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)