BAC Information

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BAC

Clone NameMSMg01-164H09
Chromosome2 (Build37)
Map Location 78,470,499 - 78,470,804
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp533, BC003993, LOC667920, OTTMUSG00000016703, LOC383717, LOC100040476
Downstream geneLOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164H09.T7 (MSMg01no164_h09.b1)MSMg01-164H09.TJ (MSMg01no164_h09.g1)
ACCAG362931AG362932
length708716
length of high quality
(start - end)
315 (54 - 368)284 (85 - 368)
definitionCHROMAT_FILE: MSMg01no164_h09.b1 PHD_FILE: MSMg01no164_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:19 2005CHROMAT_FILE: MSMg01no164_h09.g1 PHD_FILE: MSMg01no164_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCTCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTTCCACACACAAAAAAACTGTGTATGGATCTTTCA
AAAAGTAACCAAAATATCATCATACTTTCAAACCCTACTGATAATTCAGT
GACCACCTATCAATACTTGGCATTCTCATTCTCTGATTATTATCTTATAA
ATGCTATCCTTTAGTCTTTACATTCTATAATTTGAATTGGAGGTAAGTCG
CTGAAATGCAATGATTTGGCATGCCTCTTGAACTTCTTTAAACCTCTGGA
TTCCATGTCTTTTCCAGGTACCTTGCATTTGTCTGTTTGTTGAAGAAACC
AGATCAGTTCTTGTATTTTATTTCCTGCTCCCCCCCTTTTGCTGATTACA
CTCCTCAATGTCCTCTATATATCCCCTGTGCAATGATTGCGGAATCTGAG
AGAATTATGAGCCTTCTCCAGCTGAAGTGCTCAGGAGCTATAGAACCCCT
GGTGAACCCTTCCTGCAGTCTTAGTGACTGATAGTTATTTTCCATATTTA
TTAACCTTTCCAGGATCAAAACTTTTAAGAAATCCCCCCGTTTAATAGCT
GTAAGTCTTGTATCAAGACTTTTCCTGCTTAATCAAGTTCCCTGAGATGT
TTTCAGCTGAATGCCTGTCTTAACTCATTTTCTGGGCCAGTTATAAACTA
TTGCAAGG
NCCCCACTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGAC
TTTTATCATGAATGGGTGTTGGATTTTGTGAAATGCTTCCTCCCCATCTA
ACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATT
ACGTAGATGGATTTTCATATATTAAACCATCCCTGCATCCTTGGAATAAA
ACCTACTTGGTCAGGATGGATGATTGTTTTAATGTGTTCTTGGATTCGGA
TAGCGAGAACTTTATTGAGGATTTTTGCATCGATATTCATAAGGGAAATT
GGTCTGAAGTTCTCTATCTTTGTTGCCCCCCCCTCCCCCCTTAGGTATCA
GAGTAATTGTGGCTTCATAGAATGACCCGCCAAAAGAACCTTCTACTTCT
ATTTTGTGGAATAGTTTGTGCAGAACTGGAATTACATCTTCTTTGAAGGT
CTGATAGAATTCTGCACTAAACCCATCTGGTCCTGGGCTTTGCTTGGCTG
GCAGAGAATTAACGACTGCTTCTATTTCTTTACGCGATATGGGACTGTTT
ACATCGTTTACCTTGACCTTGTCTCCTCTTTGCTACCTGGTATCTGTTCA
CGACTTTGTCTTTTTTATCCCAGTTCCCCAGCTTTGTTGATCATAGCCTC
CTTTTTACCCTTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_h09.b1 MSMg01no164_h09.b1 CHROMAT_FILE:
MSMg01no164_h09.b1 PHD_FILE: MSMg01no164_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:19 2005
         (315 letters)



>mm_chr2_78470295_78471010
          Length = 716

 Score =  561 bits (290), Expect = e-164
 Identities = 302/306 (98%), Gaps = 1/306 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttc-cacacacaaaaaaactgtgtatggatctttcaaaaagtaaccaaaata 63
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaattcttttcacacacacaaaaaaactgtgtatggatctttcaaaaagtaaccaaaata 451

                                                                       
Query: 64  tcatcatactttcaaaccctactgataattcagtgaccacctatcaatacttggcattct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tcatcatactttcaaaccctactgataattcagtgaccacctatcaatacttggcattct 391

                                                                       
Query: 124 cattctctgattattatcttataaatgctatcctttagtctttacattctataatttgaa 183
           |||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 390 cattctctgatttttatcttataaatgttatcctttattctttacattctataatttgaa 331

                                                                       
Query: 184 ttggaggtaagtcgctgaaatgcaatgatttggcatgcctcttgaacttctttaaacctc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttggaggtaagtcgctgaaatgcaatgatttggcatgcctcttgaacttctttaaacctc 271

                                                                       
Query: 244 tggattccatgtcttttccaggtaccttgcatttgtctgtttgttgaagaaaccagatca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tggattccatgtcttttccaggtaccttgcatttgtctgtttgttgaagaaaccagatca 211

                 
Query: 304 gttctt 309
           ||||||
Sbjct: 210 gttctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 716
Length adjustment: 9
Effective length of query: 306
Effective length of database: 707
Effective search space:   216342
Effective search space used:   216342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)