BAC Information

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BAC

Clone NameMSMg01-164M12
Chromosome2 (Build37)
Map Location 79,179,112 - 79,358,131
singlet/doubletdoublet
Overlap geneCerkl, Neurod1
Upstream geneLOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4
Downstream geneSsfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164M12.T7 (MSMg01no164_m12.b1)MSMg01-164M12.TJ (MSMg01no164_m12.g1)
ACCAG363144AG363145
length756751
length of high quality
(start - end)
319 (40 - 358)540 (68 - 607)
definitionCHROMAT_FILE: MSMg01no164_m12.b1 PHD_FILE: MSMg01no164_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:44 2005CHROMAT_FILE: MSMg01no164_m12.g1 PHD_FILE: MSMg01no164_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,179,112 - 79,179,422)(79,357,592 - 79,358,131)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
AGACATAAAGCTATGTATTTTACATTTTAAAAATGAATTGTGACACAGTG
AACATTTGCAAATGGTCTGAGATAACCTGTGGCTAGCTGTTTTTCTAAAA
TCCAAACTGTGGTTAAAGTGTTTATGGGCAGAAGGTCTAAGTGACACATA
AGATGAAATAAATCAAACTGCCCTGGGTAGAGAGGACAGAGTGAACAATT
GCTACCACATATGTCCAGCTAAAGAGCAGAGCATTTTAATCTTACATAAC
ACTTCCATCCAGTAAGAGAGAATAGAAACCAAAAGTGTGATCTGGTGCCA
ACACTTTTTTTTTCAACCTCCCCCGCTTTAGAAAGCATTTTGCAGAAATA
CACGCAAATAATTTCATGCCTGATTTTGGTGCAAACACAAAGCCCTCCCA
AGAATAACAATGACATTAAAAGGAGGCTCAGGCTAGAGCTGTGTGGAGTC
TGAGATGTTTGCCCTTCATCCAGTTGTTCTACGTAAGAATGGACCACTGC
AGTAGACGGCACACAATGGCAATCAAAAAAAAATGCTAGTGGCAAGCTCT
TAACTGCTGAGTTAAGTGGNGTCCAATACTCCTACCCACCATGCTGTCTC
TTCCCTCTGATAACAAACAGCACCTGAGTGTTCATGTCACTGTCTTTACA
CATCATTTTTCTTAGNTGCATGATTTTATAAATATTTTTCCTCCTCCTTT
GTTCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTCTCAGAACAAATACATACAAACAACAATGA
CAAGTTTCAAAATGAGGTTAATTTTAAAAGTGATTTAATTTTCTTTCCTT
TTTAATTGGCAAGGTCTCTTAAACAGTGTGGCAAGTGCTACGTTCATTCT
TTACAGCTGAATTTGCCGACGAGGGTAGAAGTTGTTCCTTCCAGTTGTAT
TGACTCAATTAATTCATGGTCCTGTTGTTTAGAGTTCAAAATTACTTTTC
TCCCCCTCAAGGTTATAATTGTGTAATATTTGCCCAGAAAGGAAATTGAT
GTGATCATGTCTGGCTTAGCAGGAAATTAAGCAGATAAGTGGTTAGACTA
TTCATTATACTCAAGCTTTAGTGGACCAGGCACTCAGTTCTGTCCTCTAT
GTCCTAGTTCACTCTATTCTCTCCATGTTCTGGATTTCACGTTAATACCT
TCTAATTAAAGATAGCATTTCACTATGGAGCCCAGGCTGGCCTCAAGTTT
TCCACCTACCTACCTCAATCTCCCAAGTGCTGGAATTAGTTAATGTACTT
ATTATTTTCATATCTTCAAAAACTTACAATACTAAAATAATTGATATAAC
ATTTTAATAACACACAAACATGCTTTATAAAGCTTGGAATAGAAAGTTGT
AAACCTTTCACTCCTTAAATGCGACTAATTGACTATAGCCATATAATAGC
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_m12.b1 MSMg01no164_m12.b1 CHROMAT_FILE:
MSMg01no164_m12.b1 PHD_FILE: MSMg01no164_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:44 2005
         (319 letters)



>mm_chr2_79178908_79179626
          Length = 719

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagacataaagctatgtattttacattttaaaaatgaattgtgacacagtgaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagacataaagctatgtattttacattttaaaaatgaattgtgacacagtgaac 264

                                                                       
Query: 65  atttgcaaatggtctgagataacctgtggctagctgtttttctaaaatccaaactgtggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 atttgcaaatggtctgagataacctgtggctagctgtttttctaaaaaccaaactgtggt 324

                                                                       
Query: 125 taaagtgtttatgggcagaaggtctaagtgacacataagatgaaataaatcaaactgccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaagtgtttatgggcagaaggtctaagtgacacataagatgaaataaatcaaactgccc 384

                                                                       
Query: 185 tgggtagagaggacagagtgaacaattgctaccacatatgtccagctaaagagcagagca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgggtagagaggacagagtgaacaattgctaccacatatgtccagctaaagagcagagca 444

                                                                       
Query: 245 ttttaatcttacataacacttccatccagtaagagagaatagaaaccaaaagtgtgatct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttttaatcttacataacacttccatccagtaagagagaatagaaaccaaaagtgtgatct 504

                      
Query: 305 ggtgccaacac 315
           |||||||||||
Sbjct: 505 ggtgccaacac 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no164_m12.g1 MSMg01no164_m12.g1 CHROMAT_FILE:
MSMg01no164_m12.g1 PHD_FILE: MSMg01no164_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:44 2005
         (540 letters)



>mm_chr2_79357490_79358429
          Length = 940

 Score = 1044 bits (540), Expect = 0.0
 Identities = 540/540 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctcagaacaaatacatacaaacaacaatgacaagtttcaaaatgaggttaattttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cttctcagaacaaatacatacaaacaacaatgacaagtttcaaaatgaggttaattttaa 583

                                                                       
Query: 61  aagtgatttaattttctttcctttttaattggcaaggtctcttaaacagtgtggcaagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aagtgatttaattttctttcctttttaattggcaaggtctcttaaacagtgtggcaagtg 523

                                                                       
Query: 121 ctacgttcattctttacagctgaatttgccgacgagggtagaagttgttccttccagttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ctacgttcattctttacagctgaatttgccgacgagggtagaagttgttccttccagttg 463

                                                                       
Query: 181 tattgactcaattaattcatggtcctgttgtttagagttcaaaattacttttctccccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tattgactcaattaattcatggtcctgttgtttagagttcaaaattacttttctccccct 403

                                                                       
Query: 241 caaggttataattgtgtaatatttgcccagaaaggaaattgatgtgatcatgtctggctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 caaggttataattgtgtaatatttgcccagaaaggaaattgatgtgatcatgtctggctt 343

                                                                       
Query: 301 agcaggaaattaagcagataagtggttagactattcattatactcaagctttagtggacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 agcaggaaattaagcagataagtggttagactattcattatactcaagctttagtggacc 283

                                                                       
Query: 361 aggcactcagttctgtcctctatgtcctagttcactctattctctccatgttctggattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aggcactcagttctgtcctctatgtcctagttcactctattctctccatgttctggattt 223

                                                                       
Query: 421 cacgttaataccttctaattaaagatagcatttcactatggagcccaggctggcctcaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 cacgttaataccttctaattaaagatagcatttcactatggagcccaggctggcctcaag 163

                                                                       
Query: 481 ttttccacctacctacctcaatctcccaagtgctggaattagttaatgtacttattattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 ttttccacctacctacctcaatctcccaagtgctggaattagttaatgtacttattattt 103


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)