BAC Information

Click to search

BAC

Clone NameMSMg01-164N02
Chromosome2 (Build37)
Map Location 62,157,847 - 62,158,144
singlet/doubletsinglet
Overlap geneSlc4a10
Upstream geneTank, Psmd14, Tbr1, LOC100039274
Downstream geneDpp4, Gcg, Fap, Ifih1, Gca, Kcnh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164N02.T7 (MSMg01no164_n02.b1)MSMg01-164N02.TJ (MSMg01no164_n02.g1)
ACCAG363171AG363172
length714716
length of high quality
(start - end)
315 (52 - 366)477 (82 - 558)
definitionCHROMAT_FILE: MSMg01no164_n02.b1 PHD_FILE: MSMg01no164_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:46 2005CHROMAT_FILE: MSMg01no164_n02.g1 PHD_FILE: MSMg01no164_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTTCCTATTTGCTACACATTCTGTGTAAGAATGATATT
TTAAAATCTCAAATAATAATAAGATATGTTTATAATCATACTAAGTTCTC
TGCATGACTTGTATCCTGCAAAAGCCACCAGTGTTGAATGTATACAGTAT
GTGGTGATTAGAATCTGTACCTTTGTCTGAACAGGCTAGCTAGTAGGTAG
CCTGGCTCTCCTGTGACTACTCAGCTTTGAATTATGTTACATGTGTGTGA
TTCCTATGTGTCAACTGCTGTCAATAATTCAAAGAATCATATATATATAT
ATAATTTGCAAAGTTTATCTCTTGACCCACCTCACCTCATAATTTTTCAT
TAACAGTGTGTGATTAATATTCCACCAACCATATTTAATTTTGTAAAATT
ATATGCCATCTAGCTGTTACATAATTATTTAGTTTCCTACTGTTACACAC
TTACTTAGACTGCCTCCAATTTTTTTATTTTGACTTTTAAAAGACTTATC
ATCTTCCCCCTCTTCTTCTTCCTCCTCCTCTTTCTCCTCCTCCTCTTCCT
CCTCTTCCTCATCATCATCATTAACGAGACAGGTCCTCACTATGTAGCTT
TCATTGACCTGTAACTGATAAGTATAAGAGGCTGTCCTATAACTTGCCGA
GATCTGTCTGCCTT
NCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCC
CATTTTTAATGGGGTTGTTCGATTTTCTGAAGTCCACCTTCTTGAGTTCT
TTATATATGTTGGATATTAGCCCCCTATCTGATTTAGGATAGGTAAAGAT
CCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGATGGTGTCTTTTG
CCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGAT
CTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAGG
ATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCAAGAAAA
ATGAAGACTGAAGTGTGGACACCACGCCCCTCCTTAGAAGTGGGAACAAA
ACACCCTTGGAAGGAGTTACAAAGTTTGGAGCTGAGATGAAAGGATGGTC
CATGTAGAGACTGTCATATCCAGCGATCCACCCCATAATCAGCATCCAAA
CGCTGACACCATTGCATACACTAGCAAGATTTTATCGAAAGGACTCTGAT
GTAGCTGTCTCTTGTGAGACTATGCCGGGGTCTAGTACACACATAAGTGG
ATGCTCAAAGTCTGCTAATGTACGGATCACAGTGCTCCCTTTGGAGTATC
TAGAGAAAGTACCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_n02.b1 MSMg01no164_n02.b1 CHROMAT_FILE:
MSMg01no164_n02.b1 PHD_FILE: MSMg01no164_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:46 2005
         (315 letters)



>mm_chr2_62157643_62158357
          Length = 715

 Score =  576 bits (298), Expect = e-169
 Identities = 298/298 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttcctatttgctacacattctgtgtaagaatgatattttaaaatctcaaata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttcctatttgctacacattctgtgtaagaatgatattttaaaatctcaaata 264

                                                                       
Query: 65  ataataagatatgtttataatcatactaagttctctgcatgacttgtatcctgcaaaagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ataataagatatgtttataatcatactaagttctctgcatgacttgtatcctgcaaaagc 324

                                                                       
Query: 125 caccagtgttgaatgtatacagtatgtggtgattagaatctgtacctttgtctgaacagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caccagtgttgaatgtatacagtatgtggtgattagaatctgtacctttgtctgaacagg 384

                                                                       
Query: 185 ctagctagtaggtagcctggctctcctgtgactactcagctttgaattatgttacatgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctagctagtaggtagcctggctctcctgtgactactcagctttgaattatgttacatgtg 444

                                                                     
Query: 245 tgtgattcctatgtgtcaactgctgtcaataattcaaagaatcatatatatatatata 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtgattcctatgtgtcaactgctgtcaataattcaaagaatcatatatatatatata 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)