BAC Information

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BAC

Clone NameMSMg01-164P02
Chromosome2 (Build37)
Map Location 164,284,987 - 164,285,253
singlet/doubletsinglet
Overlap genenone
Upstream geneD930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4
Downstream gene2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164P02.T7 (MSMg01no164_p02.b1)MSMg01-164P02.TJ (MSMg01no164_p02.g1)
ACCAG363249AG363250
length809760
length of high quality
(start - end)		272 (51 - 322)337 (76 - 412)
definitionCHROMAT_FILE: MSMg01no164_p02.b1 PHD_FILE: MSMg01no164_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:55 2005CHROMAT_FILE: MSMg01no164_p02.g1 PHD_FILE: MSMg01no164_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCCAAGGACTCCCAAGGAAATAATACATTTAAAAAAATGAC
TATTTTCATTTTAGATTCTCAGTGTTTTCTTTCTTTAGTACAGAGTTTTC
AGGCTCTTTTTTTTTTTTCTTTTGGCCTCTGCTCCCATTATACACATGTT
TAAACTAAAGGTCAGAGAAGAGGGGCAACATACTGTCTTTTGTTTTTGTT
CTTGTTTTTGGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAAC
TCACTCTGTAGACCAGGCTGTTCTTTTTTCTTATAAACCCACTTGCCCCT
GAACCCCCACGAGTTTGGATGATTTCCCCAGGCAAAGCCCCCTNCAATNA
TATATATTTTTTTTTTTTTTTTTGTTCCCCCCCCCACAAAAAAAAAAAAA
TTCGCGCGGTTTGGGGGCCTCTCTTTTTCTCCCCCCCCTTTTTTTTTTTT
TTTCCCTCCCTTTACCTTTCCCTCCTCTTTTCCTTTTTTTTTTTCCCCCC
CTCTTCCCGTTCCTTTTTCCTTTTCTTTTTTCCTTTTTTTCCCCTCTCTC
CTTTTTTCCTTTTTCCTCTCCTTTCTTTTCTCCCTTACCCCTTATTTCTC
CCCCCTCATCTTGCCCCTTTCCTCCCTTCCACTTTTTTTCTTCTTCGCCT
TCCCCTTTTTTTCGCTTCCTTTTGTCCTTACCCCTTCTCTTATCTTTGCT
TTCTTCTCTTCTCTCCTCTTTTCCTCTCCCTCTTATCCCATTCCCCTTCC
TCTCCCATC

CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGTCTCGTAGTATTTGGCTCAAT
TTCTTCCTTTGGCATTCTATTTTTTTCATTTTAATTTGTTATTTTATGTT
TGAGTCTTTCGCCTGCGTGTAGATCTGTGCACCTGTGAGCCTGGTACCCA
CAGAGACCAGAAAAAGGCATCAGACTCCCGGGAACTGAAGTTATGGGTGC
ATGTGAGCTACTGTGTGGGTGCTGGGAACTGGTCTCAGGACCTCTGGAAG
AGCAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCCTTTAGGA
TGCTATAATGCACACTTTCACCAAACGGTTTTTATCATCATCATCATCAT
TATTTTTCTAAGAGCCCCCCCTGAGATTTTTATTTTTCAAGAGTTGCACT
AGCTGCCACATTTCGAGCTAGATACTCAGTTTCTTTCAACTTTAATGTCT
TTCTCAAATAATATTTTTAACCCCCCATTTGTTAATTCCATGCCCCGTTA
TCCTGATCATTGTCATGACCCCAAACTTCTTCCCAGATCCCACCCTTTCT
TTTCTTTCCACTTAGTTTCATGTTTCCCCTCTTTGCTCATTCCCTCTGCT
TTTTCCCGCCATATTGCCCCTTTCTCTTTCCCTGTTTCGTTCATTTCCCG
CTCTTTGCTATTACTTGTCCCCTTCCCCTCCTTCTCCAGTTTTGCCTCTC
TTCTCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_p02.b1 MSMg01no164_p02.b1 CHROMAT_FILE:
MSMg01no164_p02.b1 PHD_FILE: MSMg01no164_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:55 2005
         (272 letters)



>mm_chr2_164284861_164285532
          Length = 672

 Score =  509 bits (263), Expect = e-149
 Identities = 266/267 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcccaaggactcccaaggaaataatacatttaaaaaaatgactattttcatttta 63
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 393 ggaattcccaaggactcccaaggaaataatacattttaaaaaatgactattttcatttta 334

                                                                       
Query: 64  gattctcagtgttttctttctttagtacagagttttcaggctcttttttttttttctttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gattctcagtgttttctttctttagtacagagttttcaggctcttttttttttttctttt 274

                                                                       
Query: 124 ggcctctgctcccattatacacatgtttaaactaaaggtcagagaagaggggcaacatac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ggcctctgctcccattatacacatgtttaaactaaaggtcagagaagaggggcaacatac 214

                                                                       
Query: 184 tgtcttttgtttttgttcttgtttttggagacagggtttctctgtgtagccctggctgtc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tgtcttttgtttttgttcttgtttttggagacagggtttctctgtgtagccctggctgtc 154

                                      
Query: 244 ctggaactcactctgtagaccaggctg 270
           |||||||||||||||||||||||||||
Sbjct: 153 ctggaactcactctgtagaccaggctg 127


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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