BAC Information

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BAC

Clone NameMSMg01-165A14
Chromosome2 (Build37)
Map Location 82,103,890 - 82,104,594
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040704, Zfp804a
Downstream geneLOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292, LOC433440, Fsip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165A14.T7 (MSMg01no165_a14.b1)MSMg01-165A14.TJ (MSMg01no165_a14.g1)
ACCAG363318AG363319
length7461,169
length of high quality
(start - end)		720 (27 - 746)67 (458 - 524)
definitionCHROMAT_FILE: MSMg01no165_a14.b1 PHD_FILE: MSMg01no165_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:03 2005CHROMAT_FILE: MSMg01no165_a14.g1 PHD_FILE: MSMg01no165_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCAAG
GCTGTTACACCTTTTTATTCCAGGCTTTTCCCAAATCAACTTCAGTTAGA
ATATAATTTTCAAAAGACACTGTTATTCAAGGTGTATATATGTTCTAGTG
AAATAATCTATCAAATAAAAGTAGCATTACAAAGGTGAAAAGAAAATCAT
ACCTTTGGACCAAGCTGTCACCTCTTTCACAGAAGCCCAATCTCCTTGCA
CTGTTTCCAGATCTGCATCTCTTTCCAGGAGTTTGCCAATCATCTAGCTA
CTCTCCTTGCAATTTTCTCTTAAACCTTGTAGCTTATTTGGTCTTTTTCT
TTTTAAAATTCTAATTTTATCTGAATTATTTTAACTTGTTATATAAATTG
CTGTCCAACACAATTCATTGTTGTTTTCTAAACTTTAGTTTTCTTCATAG
TCTTCAGAATACTATGCTGCATATTTAAAATTAAAAATCATTCACTGTAT
CTAAACCCTTCAAACATGTTTCTCTTATCTTATTTTCCACATCTAATTAT
CCACATTTATGTTTGTCTTACTTGGCATATTCTTTTCTAGTGGTTAAGTG
TTATCCTTAATTTTATATCAAAATTATAAATAGGAAAGATAAGTTCCTAG
AAAGTATTCATGCATTATGTACTGAGTTTTCCTGATGAACCTTATGTTAA
GAGGCTTCTAGGAATGTAACTTTGTATCCTTTCCAATAATAATTAT

NAAAGTTTTNNNNAATGATGGAGNCTGGGGCGCCGGNGCTGAXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACATTAGGAGATACCGATGGTTATG
CGTTGCTTTGTATGTGATGGAGTCCTTTGGGTCCTTTGGNGGAGTAGCCC
GGAAGTATTTCTGTAAGCCCAGATATATAGCCTCTGGCGGCCCTCAACTT
ATAANTCCTCCTTACCCGGAATCTCACTATATTCTAACTGATTCTTTTAT
TTTTATTCATGTGTATGCATGTGTGCATGTGTATATGTGCCTATATGTGC
TTAGGCCAGGAAAGGGCTTCAGATTCTCTGGAGCTGAAGTAACAGGCAAT
TGTATGTCCCTAAATGTGTGTGCAAGTAACTGAACTATGGTACCCTGTAA
GTGGACAGCTGAGCCATCTCTATATTCGATGATGAACTCCTTAAGGAATC
ATTTTGTCTTTTTAACTTTCCTGAAATATATTACTTTGGTAATAGGATAT
GCTAGCATTATAGCAGTTTTTTCTTTGCTCTCTGTTTTGTTTGTTTTACC
TTCCCCACAATCTGAATGTTTCCATGATCCAGAACAGAATTGTAGGTCTG
TTTCCCTCCCATGTTTTCAAGAAATCTTAATATACAAATTGGGTGTGATA
GTGCACCCGTAATTCCCACACTTTTGCCCCGTGTTATTTTCCTTGGTTTC
ATGGGAAAATTGATGCACTCTTCCATAACATGTTATTTTTTTTATGATGA
ATAAATTGTTATAGCCCTGGCCAATCCCGGACCCGAACCCCTGAAATTAG
GCTATCCGTGTTTGCCCGCCAATTAATAATTAATCCCTTATATGCGCTTC
AGCGCTTGCCCCACCTTTACGCTCATGCCCAAATTTATGCCCAGCGCCCG
CTACAGGTCCCAAAAACTTGTCCCGACCCCCCCCCTGGGAAACCGGCGGC
CCTCCCCCCCCACCCCACCAACCTCTTTTCTCGGAGGGAACCACCCCCCT
CCCTCCTCCGCGCCGCAAAACTTCCCCCCTCCCCCACCCTCCCACCACCA
ACCCCGCCTCTTTTTCTCCCCCCACCCCCCCGCCCCCGGTCGGCGCCTCC
CCCTCTCTCCCCCCACAACCACTCTACACCCCTCTCTCACCCTCCTCCCC
CTCTACCCTCTCCTGCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_a14.b1 MSMg01no165_a14.b1 CHROMAT_FILE:
MSMg01no165_a14.b1 PHD_FILE: MSMg01no165_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:03 2005
         (720 letters)



>mm_chr2_82103675_82104794
          Length = 1120

 Score = 1340 bits (693), Expect = 0.0
 Identities = 702/705 (99%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattcaaggctgttacacctttttattccaggcttttcccaaatcaacttcagttagaa 75
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattcaaggctgttacacatttttattccaggcttttcccaaatcaacttcagttagaa 275

                                                                       
Query: 76  tataattttcaaaagacactgttattcaaggtgtatatatgttctagtgaaataatctat 135
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 276 tataattttcaaaagacactgttattcaaggtatatatatgttctagtgaaataatctat 335

                                                                       
Query: 136 caaataaaagtagcattacaaaggtgaaaagaaaatcatacctttggaccaagctgtcac 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 caaataaaagtagcattacaaaggtgaaaagaaaatcatacctttggaccaagctgtcac 395

                                                                       
Query: 196 ctctttcacagaagcccaatctccttgcactgtttccagatctgcatctctttccaggag 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctctttcacagaagcccaatctccttgcactgtttccagatctgcatctctttccaggag 455

                                                                       
Query: 256 tttgccaatcatctagctactctccttgcaattttctcttaaaccttgtagcttatttgg 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tttgccaatcatctagctactctccttgcaattttctcttaaaccttgtagcttatttgg 515

                                                                       
Query: 316 tctttttctttttaaaattctaattttatctgaattattttaacttgttatataaattgc 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tctttttctttttaaaattctaattttatctgaattattttaacttgttatataaattgc 575

                                                                       
Query: 376 tgtccaacacaattcattgttgttttctaaactttagttttcttcatagtcttcagaata 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tgtccaacacaattcattgttgttttctaaactttagttttcttcatagtcttcagaata 635

                                                                       
Query: 436 ctatgctgcatatttaaaattaaaaatcattcactgtatctaaacccttcaaacatgttt 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 636 ctatgctgcatatttaaaattaaaaatcattcactgtatctaaacccttcaaacacgttt 695

                                                                       
Query: 496 ctcttatcttattttccacatctaattatccacatttatgtttgtcttacttggcatatt 555
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ctcttatcttattttccacatctaattatccacatttatgtttgtcttacttggcatatt 755

                                                                       
Query: 556 cttttctagtggttaagtgttatccttaattttatatcaaaattataaataggaaagata 615
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 cttttctagtggttaagtgttatccttaattttatatcaaaattataaataggaaagata 815

                                                                       
Query: 616 agttcctagaaagtattcatgcattatgtactgagttttcctgatgaaccttatgttaag 675
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 agttcctagaaagtattcatgcattatgtactgagttttcctgatgaaccttatgttaag 875

                                                        
Query: 676 aggcttctaggaatgtaactttgtatcctttccaataataattat 720
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 aggcttctaggaatgtaactttgtatcctttccaataataattat 920


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 720
Length of database: 1120
Length adjustment: 10
Effective length of query: 710
Effective length of database: 1110
Effective search space:   788100
Effective search space used:   788100
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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