BAC Information

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BAC

Clone NameMSMg01-165G14
Chromosome2 (Build37)
Map Location 124,952,169 - 124,952,773
singlet/doubletsinglet
Overlap geneLOC100043375
Upstream gene4930517E11Rik, LOC100043360, Sema6d, LOC100043367, LOC100043369, Slc24a5, Myef2
Downstream geneSlc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1, Cep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165G14.T7 (MSMg01no165_g14.b1)MSMg01-165G14.TJ (MSMg01no165_g14.g1)
ACCAG363580AG363581
length7421,166
length of high quality
(start - end)
613 (35 - 647)75 (143 - 217)
definitionCHROMAT_FILE: MSMg01no165_g14.b1 PHD_FILE: MSMg01no165_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:33 2005CHROMAT_FILE: MSMg01no165_g14.g1 PHD_FILE: MSMg01no165_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGGCCGCTAAACGACTCCTATTTTCAGAGGATCCGCGGAATTCTTCC
GTGTTCCCCGGAGAGGTAGTATCTCTTTCTGTACAGGGAAGTGGGCAGGG
CTCCCAGCAATCTAATCTGGTTTGGCTTGGAGTTATTGAGTGACGCCACC
AAGGTACAGGCAGGGTGACTTAAGCGAAGGAAGCAGAAAGTGGTTAAAAT
GTTTCTGTTACCCAGTAATAAACACCTATATTTTCACTATAGAAGGAACT
GCAAACAGAGAAGTGCACAGTACTATGGAATATACTGTGTTAGACAGGAG
CTCCTCCACTGAGAAATATCCTTAGACCTGTAAACTCTCTTTTTCAAGCT
CCAAATAGCAAAGAACACTTACTAAGTGTTTCCCAACTCAGCCATTTCAT
TTGTCATGCCTCTAGGATGTACCCTGGGTACTTCATTTTCTTAAAAAGAT
TAAGAAGGCCCATCTGGTTACTGTTACTAGCAGGTGATAATAAAGGATAA
AGTATGTTAAGGTAACAGTATGATAATAAGGTGGTGTTAAGCTATTAACA
GAAAAGACTGGATTTTGGAGTTACATTTCTAATATGTAAGAAGGCTTCCT
TCCCTTTCTCATACATACATGCAAATATACATTCCAATTTTTGTTTTGCT
TTGTTTCGCTTTTCAAGACAGGTTTCCTCTATGTAGTCCTGCCTGCCCTG
GAACTCAATTTGTATACCAGTCTGGCCCCAATCTCAATAATC
TTTTCCCNNNNAATGATGCAGCCTGGGGNGCCTGGNGTCCAXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTGATCCTTCCCGAACTTTTGTCCT
GAATGGGTGTTGTATCTTGTCAATGCCTTTTTCGCATCTAACGAGATGAT
CCTGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGG
ATTTTTGTATATTAGGCCCTCCCTGCATCCCTGGAATAAAACCTACTTGG
TCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAAT
TTTATTAAGGATTTTTGCATCGATATATTCATAACAGAAATTGGTCTGAA
GTTCTCTATCTTTGTTGGATCTTTCTGTGGCTTAGGTATCATAGTAATAG
TGGCTCTCTACAATGAGTTGGGTGGAGTACCTTCTACTTCTATCTTGTGA
AATAGTTTGTGCAGAACTGGACTTCCATCCTCTTTGAAGGTCTGATAGAA
CTCCGCACTAAACCCCTTTGCTGCTGGCCTTTTTTTGGCTGGCAGACTAT
TAATAACTGCTTCTATTTCTTTACGGGATATGGGACCTGCTTAGAAGGCC
CCCTTGACCCTGACTCCCCTTCGCCACCCGCCCTCCGTCCCCACTTCCCC
CCTTTCCCCCCGCCCTCCCCAGCTCCGTCCCCCCCCCCCCCCCTTCCCCC
CGTCCCCCACCCCGCTCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCC
TCCTCCCCCCTCCCGCCCCCCCCCCCCTCCCCCCTCCCTCCCCCCCCCCC
CCCCCCCCTCCCTCTCCCCCTCTCCCCCTCTCTCTCCCCCCCCCCCCCCC
TCCCCCTCCCCCCCTCCCCCCCCCCCCCCCCACCTCCCCTCCCTCCCCCT
CCTCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCTCTCCCCCC
CTCCCCCTCTCCCCTCCCCCCCCCCCGCCTCCCCCCCCCCTCCTCCCCTC
CCTCCCCCCCCCCCCCTCCCCCCCCTCCCCCTCCCCCCTCCCTCTCCCCC
TCTCCTCCCCCCCCCCTCTCCCCTCCCCCCTCTCCCCCTCCCCCCCCCCC
CCCTCCCCCCCCCTCCCCCCCCCTCCTCTCCCTCCCTCCCCTCCCCCTTC
CCCCCCCCTCTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_g14.b1 MSMg01no165_g14.b1 CHROMAT_FILE:
MSMg01no165_g14.b1 PHD_FILE: MSMg01no165_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:33 2005
         (613 letters)



>mm_chr2_124951963_124952973
          Length = 1011

 Score = 1073 bits (555), Expect = 0.0
 Identities = 594/611 (97%), Gaps = 10/611 (1%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcttccgtgttcccc---ggagaggtagtatctctttctgtacagggaagtgggca 63
           ||||||||||||||   ||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 811 gaattcttccgtgt---cctaaggagaggtagtatctctttctgtacagggaagtgggca 755

                                                                       
Query: 64  gggctcccagcaatctaatctggtttggcttggagttattgagtgacgccaccaaggtac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 gggctcccagcaatctaatctggtttggcttggagttattgagtgacgccaccaaggtac 695

                                                                       
Query: 124 aggcagggtgacttaagcgaaggaagcagaaagtggttaaaatgtttctgttacccagta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 aggcagggtgacttaagcgaaggaagcagaaagtggttaaaatgtttctgttacccagta 635

                                                                       
Query: 184 ataaacacctatattttcactatagaaggaactgcaaacagagaagtgcacagtactatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ataaacacctatattttcactatagaaggaactgcaaacagagaagtgcacagtactatg 575

                                                                       
Query: 244 gaatatactgtgttagacaggagctcctccactgagaaatatccttagacctgtaaactc 303
           ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 574 gaatatactgtgttagacaggagctccaccactgagaaatagccttagacctgtaaactc 515

                                                                       
Query: 304 tctttttcaagctccaaatagcaaagaacacttactaagtgtttcccaactcagccattt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tctttttcaagctccaaatagcaaagaacacttactaagtgtttcccaactcagccattt 455

                                                                       
Query: 364 catttgtcatgcctctaggatgtaccctgggtacttcattttcttaaaaagattaagaag 423
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 catttgtcatgtctctaggatgtaccctgggtacttcattttcttaaaaagattaagaag 395

                                                                       
Query: 424 gcccatctggttactgttactagcaggtgataataaaggataaagtatgttaaggtaaca 483
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gcccatctggttactattactagcaggtgataataaaggataaagtatgttaaggtaaca 335

                                                                       
Query: 484 gtatgataataaggtggtgttaagctattaacagaaaagactggattttggagttacatt 543
           |||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 334 gtatg---ataaggtggtgttaagctattaacagaaaagaccggattttggagttacatt 278

                                                                       
Query: 544 tctaatatgtaagaaggcttccttccctttctcatacatacatgcaaatatacattcca- 602
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 277 tctaatatgtaagaaggcttccttccctttctcacacatacatgcaaatatacattccat 218

                      
Query: 603 atttttgtttt 613
            ||||||||||
Sbjct: 217 ttttttgtttt 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1011
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1001
Effective search space:   603603
Effective search space used:   603603
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)