Query= MSMg01no165_l15.b1 MSMg01no165_l15.b1 CHROMAT_FILE:
MSMg01no165_l15.b1 PHD_FILE: MSMg01no165_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:00 2005
(606 letters)
>mm_chr2_45221262_45222267
Length = 1006
Score = 1054 bits (545), Expect = 0.0
Identities = 589/605 (97%), Gaps = 8/605 (1%)
Strand = Plus / Minus
Query: 5 gaattcaaggctgactcgccctttttatcaacataccaataaaaaataacaaattacaaa 64
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 gaattcaaggctgact-ggcctttttatcaacataccaataaaaaataacaaattacaaa 925
Query: 65 aatttaaaaaaaaataaactgttgcactaagatgtcaaacacgcaccttcatccctgtca 124
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 924 aattt-aaaaaaaataaactgttgcactaagatgtcaaacatgcaccttcatccctgtca 866
Query: 125 caatggctaccatcaaaaacaaacaaaaaaaaccaaaacaaaccaaacaaaaacaaaaaa 184
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 865 caatggctaccatcaaaaacaaacaaaaaaaaacaaaacaaaacaaacaaaaacaaaaaa 806
Query: 185 caaagtaacaaatctagtaaggatgtatcacaagtttaataggtgctgggagctgtctac 244
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 caaagtaacgaatctagtaaggatgtatcacaagtttaataggtgctgggagctgtctac 746
Query: 245 aaggaccctactctggtatgcacaaataattggatgccct-ccccccacagaaaaagaca 303
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 745 aaggaccctactctggtatgcacaaataattggatgccctcccccccacagaaaaagaca 686
Query: 304 gaagaccaaacatcaaagaaaattagtgtaataacttcatctgtttggggtgggagagat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaagaccaaacatcaaagaaaattagtgtaataacttcatctgtttggggtgggagagat 626
Query: 364 ctatagatt--tcgccccctttaaatggatgctggcttggattttttatagcgactgtgg 421
||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctatagatttgttg--tcctttaaatggatgctggcttggattttttatagcgactgtgg 568
Query: 422 actttcccatttccaagagtgccctgtttagatattgacccccaagcctttgcaccgttt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 actttcccatttccaagagtgccctgtttagatattgacccccaagcctttgcaccgttt 508
Query: 482 ctccctgcaatgtcttctgggaactggagctgctatttcaagaagcctgctttctctttc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ctccctgcaatgtcttctgggaactggagctgctatttcaagaagcctgctttctctttc 448
Query: 542 ttcctctacctacgtccttgctaatatcttctccaaaagaactttaaaaaacaaaacaaa 601
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 447 ttcctctacctacgtccttgctaat-tcttctccaaaagaaatttaaaaaacaaaacaaa 389
Query: 602 gctgt 606
|||||
Sbjct: 388 gctgt 384
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no165_l15.g1 MSMg01no165_l15.g1 CHROMAT_FILE:
MSMg01no165_l15.g1 PHD_FILE: MSMg01no165_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:00 2005
(439 letters)
>mm_chr2_45168174_45169014
Length = 841
Score = 826 bits (427), Expect = 0.0
Identities = 437/441 (99%), Gaps = 3/441 (0%)
Strand = Plus / Plus
Query: 1 taatgaaagtagaaataagcttcaaaggtggagcagtaactgtaaaagttaaacatggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatgaaagtagaaataagcttcaaaggtggagcagtaactgtaaaagttaaacatggat 260
Query: 61 ttgagactcctgagagcttatgataatagggcagaggtagaca--cccccccccccacca 118
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ttgagactcctgagagcttatgataatagggcagaggtagacacccccccccccccacca 320
Query: 119 tctgggtaagtctaggatacagctgttctcaggtgctcctgccacaatgcctgtgctctg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgggtaagtctaggatacagctgttctcaggtgctcctgccacaatgcctgtgctctg 380
Query: 179 tgtccatggactcaaagcctgtaaaagaattagtgtctttcaccaccagagaagcttcct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtccatggactcaaagcctgtaaaagaattagtgtctttcaccaccagagaagcttcct 440
Query: 239 ccagcaataggtagaaactaattcagaaacccgcaactggacaacgatctgggagtgagg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagcaataggtagaaactaattcagaaacccgcaactggacaacgatctgggagtgagg 500
Query: 299 gaccttggaatactcaatctttaatggggtttctccagcaaactatctaggttccattca 358
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 gaccttggaatactcaatctttaatggggtttctccagcaaactatttaggttccattca 560
Query: 359 ggactgaagtagccctgttcaatagaaggcagaaagattgtatgagtcagaggagatgga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggactgaagtagccctgttcaatagaaggcagaaagattgtatgagtcagaggagatgga 620
Query: 419 tgata-aaaaaaaaaaaaaaa 438
||||| |||||||||||||||
Sbjct: 621 tgatataaaaaaaaaaaaaaa 641
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 841
Length adjustment: 9
Effective length of query: 430
Effective length of database: 832
Effective search space: 357760
Effective search space used: 357760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
