BAC Information

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BAC

Clone NameMSMg01-165O10
Chromosome2 (Build37)
Map Location 124,432,133 - 124,432,802
singlet/doubletsinglet
Overlap genenone
Upstream gene4930517E11Rik, LOC100043360
Downstream geneSema6d, LOC100043367, LOC100043369, Slc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1, Cep152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165O10.T7 (MSMg01no165_o10.b1)MSMg01-165O10.TJ (MSMg01no165_o10.g1)
ACCAG363898AG363899
length7451,148
length of high quality
(start - end)		671 (37 - 707)---
definitionCHROMAT_FILE: MSMg01no165_o10.b1 PHD_FILE: MSMg01no165_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:14 2005CHROMAT_FILE: MSMg01no165_o10.g1 PHD_FILE: MSMg01no165_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCTGA
TATATTTTCCACCATGAAAATCTACATCCTACACTATGTTATTCGTGAAA
ATTCATGCAAAACATTGTTCCCATCAATTGAATAATAGTATGAATATCTG
AATTAAAAGACATAACCCATGCAGACAGGAGTAGAGATAGAACTGAACAA
AAATCTATAACACACCCATTGAGTCCTGAGCCTCACATTTCCTGTGAGTC
TGAATTGAGTTTCTGATCCAGTTCTATAGCATCCCAGGATTGCATTGCCT
TTGTGATATCTAGAAAAGTATTGTCTAGTGTTTATTCCATGCCTGCTGTA
CTCCTGGCAAGAGGTTAAACATGTCACCTGTATTATACCTTCCAGTCAGC
CACAGAAGCCATTTAAAGTTTTATTAGCATGCTTGTTTTGCAAATAAGGA
GACTGAAGCCCACTGTGGTTAAATAAATTATCCAAATCGCAAATCTACTG
GGAAGTGGCTGGATTTGAATGCAAACTGTATAAACTCCAAACACTTCATT
CTTAGCGGTTGCTATTCAGACCCCACTAAATAAGATGGAGCACACAAAAC
CTAATTACATGTGCGACATTAACTAAATCACCTAAATTTCTTTCTTCTGC
TTCTTTGTTGTTGTTGTTGTTATTTTGTAGGTTTCCTCACCTTTAACATG
GTGTTAATAATAGTATTTCCCTCATAGAATTGATGCACACTAATA

NGGAGTCCNNNAAAAGACGCGANCTGGGGCGCCGGNCGCTGAXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCTCCTTT
TTTAATAGGGTTATTTGATTTTACCGAGCCCCTCTTCCCCAGTTCCCTCC
TATACCATCACCCAACCACGACCCCCTTGCCTATGCCCGCAAGATTTTGC
TGAAAGGACCCTGATATAGGTGTCTCTTGTGAGGCTATGCCAGTGCCCTG
GCAAATACAGAAATGGATGCTTACAGTCATCTATTGGATGGAACACAGGG
CCCCCCATGAAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCAGC
AACCCTATAGGAGAATCAACAATATGAACTAACCAGTACCCCACAAAACT
GTGTCTCTAGTTGCATATGTAGCAGAGGATGGTCTAGTCGGCCATCAATG
TTAGGAGAGGCCCTTGGTCTTGGGAAGATCATTTGCCCCAATACAGGGGA
ATGCCAGGGCCAGGAAGTGGGAGTGGGTGGGTTGAGGAGCACGGCGGCCG
AGGGTATACCCCCCCTCCCCCCCCCCCCTCCCCCTCCCCCCCCCCCCCCC
TCCCCCCCCCCCCCCCCCTCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCC
CCCCCCCTCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCTCCCCCCCCCCT
CTCCCCCCCCCCCCCCCCCCCCTCCCCCTCCCCCCCCCCCCTCCCCCCCC
CTCCCTCCCCCCCCCCCCCCCCCTCCNCCCCCCCCCCCCTCCCCCCCCCC
CCCCCCCCTCCCCCCCCTCCCCTCTCCCCCCCCCCTCCCTCCCCCCCCTC
CCTTCCCTCCCCCCTCTCCCCCCCTCCCCTCCCCTCCTCCTCCCCCCTCC
CCCCCCTCCCTCTCTCCCCTCCCCCCCCTCCCCCCCCCCCCCCCCTCCCC
CCCCCCCNCCCCTCCCTTCCTCCCCCCCTCCCTCCCGCCTCCNCCCCCGC
CCCTCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCTCTCTCCC
CTCCCCCTCCCCCCCTTCCCCCTCCCTCTCCCCTCCTCCTCTCCCCTCCC
TTCCCCCTCCTTCCCTCCCCCCCCCTCCCCCCCTCCCCCCCTCTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_o10.b1 MSMg01no165_o10.b1 CHROMAT_FILE:
MSMg01no165_o10.b1 PHD_FILE: MSMg01no165_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:14 2005
         (671 letters)



>mm_chr2_124431929_124433002
          Length = 1074

 Score = 1241 bits (642), Expect = 0.0
 Identities = 662/670 (98%), Gaps = 3/670 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattctgatatattttccaccatgaaaatctacatcctacactatgttattcgtgaaa 64
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 205 ggaattctgatatattttaaaccatgaaaatctacatcctacactatgttatttgtgaaa 264

                                                                       
Query: 65  attcatgcaaaacattgttcccatcaattgaataatagtatgaatatctgaattaaaaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attcatgcaaaacattgttcccatcaattgaataatagtatgaatatctgaattaaaaga 324

                                                                       
Query: 125 cataacccatgcagacaggagtagagatagaactgaacaaaaatctataacacacccatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cataacccatgcagacaggagtagagatagaactgaacaaaaatctataacacacccatt 384

                                                                       
Query: 185 gagtcctgagcctcacatttcctgtgagtctgaattgagtttctgatccagttctatagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 gagtcctgagcctcacatttcctgtgagtctgaattgagtttctgatccagttctgtagc 444

                                                                       
Query: 245 atcccaggattgcattgcctttgtgatatctagaaaagtattgtctagtgtttattccat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atcccaggattgcattgcctttgtgatatctagaaaagtattgtctagtgtttattccat 504

                                                                       
Query: 305 gcctgctgtactcctggcaagaggttaaacatgtcacctgtattataccttccagtcagc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcctgctgtactcctggcaagaggttaaacatgtcacctgtattataccttccagtcagc 564

                                                                       
Query: 365 cacagaagccatttaaagttttattagcatgcttgttttgcaaataaggagactgaagcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cacagaagccatttaaagttttattagcatgcttgttttgcaaataaggagactgaagcc 624

                                                                       
Query: 425 cactgtggttaaataaattatccaaatcgcaaatctactgggaagtggctggatttgaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cactgtggttaaataaattatccaaatcgcaaatctactgggaagtggctggatttgaat 684

                                                                       
Query: 485 gcaaactgtataaactccaaacacttcattcttagcggttgctattcagaccccactaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcaaactgtataaactccaaacacttcattcttagcggttgctattcagaccccactaaa 744

                                                                       
Query: 545 taagatggagcacacaaaacctaattacatgtgcgacattaactaaatcacctaaatttc 604
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 745 taagatggagcacacaaaacctaattacatgtgcgacattaactaaatcacctacatttc 804

                                                                       
Query: 605 tttcttctgcttctttgttgttgttgttgtt---attttgtaggtttcctcacctttaac 661
           |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 805 tttcttctgcttctttgttgttgttgttgttgttattttgtaggtttcctcacctttaac 864

                     
Query: 662 atggtgttaa 671
           ||||||||||
Sbjct: 865 atggtgttaa 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1074
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1064
Effective search space:   703304
Effective search space used:   703304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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