BAC Information

Click to search

BAC

Clone NameMSMg01-166H17
Chromosome2 (Build37)
Map Location 109,107,633 - 109,107,954
singlet/doubletsinglet
Overlap geneMett5d1
Upstream geneLOC100043078, LOC668790, LOC623003, LOC100043423, LOC623031
Downstream geneKif18a, Bdnf, LOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797, Bbox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166H17.T7 (MSMg01no166_h17.b1)MSMg01-166H17.TJ (MSMg01no166_h17.g1)
ACCAG364293AG364294
length752750
length of high quality
(start - end)		325 (47 - 371)341 (78 - 418)
definitionCHROMAT_FILE: MSMg01no166_h17.b1 PHD_FILE: MSMg01no166_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:00 2005CHROMAT_FILE: MSMg01no166_h17.g1 PHD_FILE: MSMg01no166_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTAGAAGCACTCATAGAATAAATATGCAAAATAACATAAAACC
CACAAAAGTAAAATTAATGAAACAATTCTTTTTATTTGTATTTTCAAAAC
TAATGAAAAACAACCATCTATTTCTAGAAACTACAAAACAACGTGGAGAC
AACAGTGCTTATTACAAAAGTATAATTTGCTTTAAAAGTCTTCTATTTAA
CCATGCCACTATCCTCAAGTCAAGCGTGTTAACTCCATCAGAGAGTAGGC
TCAGGACTGACTGTCTGCTGAAAACTTGCCGGCGCAGCCCAGCTGCTCTA
TTACAGAGCTGTATCTGATGTCCAAGGCGACCACTATTTTGTTGGCCCTT
TTAGAATGTAGTATCACCCCCCCCAAAGCAAGTTCTTCACAAATTTATGG
AAAAAAATGAAGAACGGGATTATTGTGTAACATGAAGCCCAATGACTGCA
ATGTCTTCAGAGTCTAGTGTGTAAACAAGAAAGCCAACTAGGTTCAATCA
ACATCATAAATTATCATTATAACTATACTTAAACATTCATCCCCACCTAC
AATATAAGGCAGGCACCCTATAGGCACTAGGAATGCAAATAAAAAAAAAA
AAGAAATTGTCCTTGATTTGAATGAGCCTTTCATACTGTGGCAATCTTAA
TATAACATAAAGGCTTCTTTCCCTTTGAATTATGAAAGATCCTGAAAGTC
GN

CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGACAATTGAAAAAGTCATA
GGGAAACATTATTTTATGTTTATTTAAAGTACATATTATATGAGTGTATG
TGGGTACATACATAAGTGATTGAAATAAAGTTAAGCGTAAGCTGATAATG
CTCCCCCCAAGAGCCAGAGACTAGCAGAAAGCCCTGTAGCAGGCATGGGA
AACGTCCCTTCACATTTTATGATCAGAGAAGAAAGCCCTGTAGCAGGCAT
GGGAAACGTCCCTTCACATTTTATGATCTGAGAAGTCCAAGAGACTGCCA
AAACAATACAGGCAATTGCTATAGCTCTTGTTTGCTGCCCAGAACTTGAA
GGTAAGACCTTATTTGTACCCCCACCTTGCAATTCTAAGAGAACTTGGAG
AAACAGAGTTTGGTCTAGTCTGAAAGCTACCTCCTTGAGTTTTTATTATC
AGAAAGTGCCATGCAAGCTGCCAAAGGAGAGGAGCAATCAGTTGTTCTAC
CCAACTGCAAAGGATATTAAAAAGGTACTAATATGATTTAAAAGAAATCA
AATCATCCCTATTCACATCACTATGTATTATACTTTAAGGGGTCTCTTCA
TAACTAAAAATCTTCTTTACTACTTCCTTATCCCCGTGTCTTTGTTCAAC
TTCACATTTTTTTCTCCATCTTTACTTTTTTATTTTTTTGCTATCCCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_h17.b1 MSMg01no166_h17.b1 CHROMAT_FILE:
MSMg01no166_h17.b1 PHD_FILE: MSMg01no166_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:00 2005
         (325 letters)



>mm_chr2_109107430_109108154
          Length = 725

 Score =  615 bits (318), Expect = e-180
 Identities = 321/322 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttagaagcactcatagaataaatatgcaaaataacataaaacccacaaaagt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttagaagcactcatagaataaatatgcaaaataacataaaacccacaaaagt 263

                                                                       
Query: 64  aaaattaatgaaacaattctttttatttgtattttcaaaactaatgaaaaacaaccatct 123
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaaattaatgaaacaattatttttatttgtattttcaaaactaatgaaaaacaaccatct 323

                                                                       
Query: 124 atttctagaaactacaaaacaacgtggagacaacagtgcttattacaaaagtataatttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atttctagaaactacaaaacaacgtggagacaacagtgcttattacaaaagtataatttg 383

                                                                       
Query: 184 ctttaaaagtcttctatttaaccatgccactatcctcaagtcaagcgtgttaactccatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctttaaaagtcttctatttaaccatgccactatcctcaagtcaagcgtgttaactccatc 443

                                                                       
Query: 244 agagagtaggctcaggactgactgtctgctgaaaacttgccggcgcagcccagctgctct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agagagtaggctcaggactgactgtctgctgaaaacttgccggcgcagcccagctgctct 503

                                 
Query: 304 attacagagctgtatctgatgt 325
           ||||||||||||||||||||||
Sbjct: 504 attacagagctgtatctgatgt 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |