BAC Information

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BAC

Clone NameMSMg01-166H19
Chromosome2 (Build37)
Map Location 53,911,166 - 53,911,403
singlet/doubletsinglet
Overlap genenone
Upstream geneFmnl2, Prpf40a, Arl6ip6, LOC666872, LOC666876, LOC207933
Downstream geneRprm, LOC666913, LOC626563, LOC100041792, LOC100042878, Galnt13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166H19.T7 (MSMg01no166_h19.b1)MSMg01-166H19.TJ (MSMg01no166_h19.g1)
ACCAG364297AG364298
length805763
length of high quality
(start - end)
144 (49 - 192)241 (79 - 319)
definitionCHROMAT_FILE: MSMg01no166_h19.b1 PHD_FILE: MSMg01no166_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:00 2005CHROMAT_FILE: MSMg01no166_h19.g1 PHD_FILE: MSMg01no166_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTAACGCCACAGATGGTACCAAAGTCTATACATATTGGTTCT
TTATGTATACATACACCCGTGACAAAACTTTGTGCATAAATTTGACACAG
TAATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTANTTTCTTT
TTTTTTTTTTTNTTTTNTTTTTTAATTTTTNTTTTTTTTTTTTTTTTTTT
TCTTTTTTTTTTTTTTTTTCTTTTTTACTTTTTTTTTTTTCTTTCTTTCC
TCTCTAATCCTTTCATACCCCTTTTTTTCTTTCTATATTTTATTCACTTT
ATACACAAATTATTTTTTTTTTTTCCCCCCCCCCCCCCCCTTTTTTTTTT
TTTTTTTTTTTTTATAAACCCCCCTTTCCCCCAAAAAAAAAAAAAAATTT
TTGTGTTTGGTTTTATTTTACCTTCTCCTCTTTTATCCATGAAACACACC
CTTTATATTTTTTTTTTTTTTTTTATCTTCTTTAATTCTATTTCACTCTT
CTATTTGTCTTTTTATTTTTTTTTTAATCTTTTCTTTCTCATTCCCTCAT
ATCTTTTTGGCACTCGTAATATTTCATCTTCTATTTTTTTTCCTCTTCCT
ATTTTCTTTTCTATCCCCACCCTAACTACATCTTCTAATTTTTTTTTTAT
TATATTTTTTTTTTTTCTACAACTACTTCCCACTCTGTTATTATTTTTTG
TTTTTCTTTTTTCTTTCTCCACATATAATTAGATTTTGTTTCCCTCTTTT
ATTTT
NCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGGAAGGAAACAAGGACTGA
TGGAAGGGAAGTAGTAATTCATGGTGGAGAAGTCTCTATTAGAGCTAAGT
TGCAGGGAAACAAGTTACTGGCTGTTGTACCTGAGTTTTCTGGGCAAAAT
CTGAATTACCTTCTGCCTAAATCTCTGTTTTCCAAGTTATTAGAATCCCT
AGTTCTTACATTCGCAAATAAGATTTTAGGAAATAAGAAGAAATTTTAAT
TTGTTTACTTTTAAATTTGCTTTGTTTTTTTTTTCATAACAATGCAAATT
TCTCTTGTAATTATAAAGTAATATAATAGCAATTGCCATTTTTTACTATA
TGTATACAATATTATTTGTCCCCCCCCCCCCCAAANGATGAAGGAAACCA
CATATTCTTCAGTTTTTAACTCTTACTCTCCCTATGTAATTATTTCATTG
TGCTTCCTCCCTCTGTTATGCACTACTTCTCTTTTTTCCCCCTTTTATTT
CTATTCTTCTTGTTTTCCGGAATTCTTATTCTTTTCCTTTTCAGTCTTTT
TCTCCTTGTTATTTTTTGTATTAACTTCCTTTTATTTATTCATTCATATC
ATCATCCTCCTATCTCAGTTTACACCTCTTCTCCATTTTTTTCATCATTG
TCTTCTACTTTTCTTTTTTTTTTCCCCTTCCTTTCTTTTTTTTTTTTTCC
CCCTTTCCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_h19.g1 MSMg01no166_h19.g1 CHROMAT_FILE:
MSMg01no166_h19.g1 PHD_FILE: MSMg01no166_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:00 2005
         (241 letters)



>mm_chr2_53910966_53911603
          Length = 638

 Score =  427 bits (221), Expect = e-124
 Identities = 235/241 (97%), Gaps = 3/241 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaggaaggaaacaaggactgatggaagggaagtagtaattcatggtggagaagtctcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaggaaggaaacaaggactgatggaagggaagtagtaattcatggtggagaagtctcta 260

                                                                       
Query: 61  ttagagctaagttgcagggaaacaagttactggctgttgtacctgagttttctgggcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagagctaagttgcagggaaacaagttactggctgttgtacctgagttttctgggcaaa 320

                                                                       
Query: 121 atctgaattaccttctgcctaaatctctgttttccaagttattagaatccctagttctta 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 atctgaattaccttctgcctaaatctctgtttttcaagttattagaatccctagttctta 380

                                                                       
Query: 181 cattcgcaaataagattttaggaaataagaagaaattttaatttgtttacttttaaattt 240
           |||||||||||||||||||||||||||||||   |||||||||||||||| |||| ||||
Sbjct: 381 cattcgcaaataagattttaggaaataagaa---attttaatttgtttacatttacattt 437

            
Query: 241 g 241
           |
Sbjct: 438 g 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 638
Length adjustment: 9
Effective length of query: 232
Effective length of database: 629
Effective search space:   145928
Effective search space used:   145928
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)