BAC Information

Click to search

BAC

Clone NameMSMg01-166P20
Chromosome2 (Build37)
Map Location 112,878,445 - 113,053,593
singlet/doubletdoublet
Overlap genenone
Upstream geneOlfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
Downstream gene4930563P21Rik, Fmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166P20.T7 (MSMg01no166_p20.b1)MSMg01-166P20.TJ (MSMg01no166_p20.g1)
ACCAG364639AG364640
length768756
length of high quality
(start - end)		504 (44 - 547)494 (77 - 570)
definitionCHROMAT_FILE: MSMg01no166_p20.b1 PHD_FILE: MSMg01no166_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:38 2005CHROMAT_FILE: MSMg01no166_p20.g1 PHD_FILE: MSMg01no166_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,053,096 - 113,053,593)(112,878,445 - 112,878,938)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGG
AATTCTACCAGTGATGTCAGTTCTGCCCTTCTGGAACTCATAGCTCCTGG
CTGGAGTGCTGGTGAACTTTTACCTGGTGGCTACGGATGCTAGCTTGCTT
CTCTTGTAGGCAGTGTGGATTTATTTTCCAGCTCTTGAAGTAGATACTTT
TGCTCAGGATGCCAAGTGGGAAAGATGTGAAAAACATCCTCCTGGAGCTG
CAGAGAGCATAATGCAGGCAGAGCTAGAAGGCAGACCCCAGATACCCAGG
TGTGGACCTCTGCAGGGCCGACCGGGAGCTCTACTGCCAAATGAGTGTGA
ATGCTAATGCCGGCCTTCCAAGGTCTCTACAGGGCCTCTCAACTACACAG
TCTCTTCCTTGACAATCTCCCACAGCTGATTTGATTCGGTACCAGTGTAG
TAATGCACATAATATTCTCTTCTTCCCAGCGAAATGCCCCTGGTGCGTGT
GAATAGGAAGCAAGGCCCTTTCTTCCAAGTAATCAAGTTGAGCTGGGAAA
ACTGTTTCTGCATTACGCTGTTGTGTCTTTTACCTGTCGCGCTTCCCTGT
TGACCATACGCTTTTTCTGCCGTATTTCCCACTTAACCCGACGCCTCCCC
TTTATTTTCCCCCCCCTTTCCCCCTTTAGTTCCCCCCCCTGTATTTCTTC
CCCCATTCTCCCCCTTTCCCCCTTTTTCTCCCCCCCCGCTTTTTTCCTCC
CCATCTTTTATATCTTTC

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACAGCAAGTCACAACATAGACTG
TGTAACCTCAGAGGTAGCAAAGGCCAATGGCATACAGCCATGGTACACAC
ACATACACACAAAGCCCCTGGATCTAACATTTCCTGAATGTCATTCTTTA
AAAAGGTATGACTAGGGCACTTTAACTTTATAGGTTCACACCATAAGTGT
GTGTCTCTACTTTCGTTCTTGGTAAGCACTGTGACTTTGCAGGAAGGAAA
GCATCTAATTCTGACTATACTTTGTCACTAGTCAGGGACACTGATAGGTT
GTGTAAGGACAGGTGCTTTTGTGTGCTATTAGAGCTATTTATTTCATTGG
TTTCCTTTACTGTCATCACCGCCTCCTCATTTGAAGCACGGTGTCTTTCT
TGGGCATACTGGCTTTTTCATACTACCCACCCACTTTCTATGAAATCTTC
TGACAATGTTTATGCTACGTATAGGGAATGGGCTGTTGTGTATCCTGTTT
TACTTCTGGGAAATAATACAGTTTCTGGGATTTTTCTGTCTATGGTGCTT
CCGAGTACTTGCTGATACCTTTCGGCCATTTGTTGAACATAAGAGTCAAT
AATATCACAACCTCTTTTGCGTGCAATCTTCCTCATACCGCGTGTTTACA
ACTTATATCTTTCATTTATTTCCCGATTGTATTATATGATTCCCTAATAT
ACCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_p20.b1 MSMg01no166_p20.b1 CHROMAT_FILE:
MSMg01no166_p20.b1 PHD_FILE: MSMg01no166_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:38 2005
         (504 letters)



>mm_chr2_113052890_113053793
          Length = 904

 Score =  917 bits (474), Expect = 0.0
 Identities = 492/498 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctaccagtgatgtcagttctgcccttctggaactcatagctcctggctggagtgc 66
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gaattctaccagtgatgtgagttctgcccttctggaactcatagctcctggctggagtgc 645

                                                                       
Query: 67  tggtgaacttttacctggtggctacggatgctagcttgcttctcttgtaggcagtgtgga 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tggtgaacttttacctggtggctacggatgctagcttgcttctcttgtaggcagtgtgga 585

                                                                       
Query: 127 tttattttccagctcttgaagtagatacttttgctcaggatgccaagtgggaaagatgtg 186
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tttatttcccagctcttgaagtagatacttttgctcaggatgccaagtgggaaagatgtg 525

                                                                       
Query: 187 aaaaacatcctcctggagctgcagagagcataatgcaggcagagctagaaggcagacccc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aaaaacatcctcctggagctgcagagagcataatgcaggcagagctagaaggcagacccc 465

                                                                       
Query: 247 agatacccaggtgtggacctctgcagggccgaccgggagctctactgccaaatgagtgtg 306
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 agatacccaggtgtggacatctgcagggccgaccgggagctctactgccaaatgagtgtg 405

                                                                       
Query: 307 aatgctaatgccggccttccaaggtctctacagggcctctcaactacacagtctcttcct 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aatgctaatgccggccttccaaggtctctacagggcctctcaactacacagtctcttcct 345

                                                                       
Query: 367 tgacaatctcccacagctgatttgattcggtaccagtgtagtaatgcacataatattctc 426
           |||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tgacaatctctcagagttgatttgattcggtaccagtgtagtaatgcacataatattctc 285

                                                                       
Query: 427 ttcttcccagcgaaatgcccctggtgcgtgtgaataggaagcaaggccctttcttccaag 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ttcttcccagcgaaatgcccctggtgcgtgtgaataggaagcaaggccctttcttccaag 225

                             
Query: 487 taatcaagttgagctggg 504
           ||||||||||||||||||
Sbjct: 224 taatcaagttgagctggg 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no166_p20.g1 MSMg01no166_p20.g1 CHROMAT_FILE:
MSMg01no166_p20.g1 PHD_FILE: MSMg01no166_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:39 2005
         (494 letters)



>mm_chr2_112878245_112879138
          Length = 894

 Score =  917 bits (474), Expect = 0.0
 Identities = 489/494 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagcaagtcacaacatagactgtgtaacctcagaggtagcaaaggccaatggcataca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagcaagtcacaacatagactgtgtaacctcagaggtagcaaaggccaatggcataca 260

                                                                       
Query: 61  gccatggtacacacacatacacacaaagcccctggatctaacatttcctgaatgtcattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccatggtacacacacatacacacaaagcccctggatctaacatttcctgaatgtcattc 320

                                                                       
Query: 121 tttaaaaaggtatgactagggcactttaactttataggttcacaccataagtgtgtgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaaaaaggtatgactagggcactttaactttataggttcacaccataagtgtgtgtct 380

                                                                       
Query: 181 ctactttcgttcttggtaagcactgtgactttgcaggaaggaaagcatctaattctgact 240
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 ctactttggttcttggtaagcactgtgactttgcaggaaggaaagcatctaattctaact 440

                                                                       
Query: 241 atactttgtcactagtcagggacactgataggttgtgtaaggacaggtgcttttgtgtgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atactttgtcactagtcagggacactgataggttgtgtaaggacaggtgcttttgtgtgc 500

                                                                       
Query: 301 tattagagctatttatttcattggtttcctttactgtcatcaccgcctcctcatttgaag 360
           |||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 501 tattagagctgtttatttcattggtttcctttactgtcatcactggctcctcatttgaag 560

                                                                       
Query: 361 cacggtgtctttcttgggcatactggctttttcatactacccacccactttctatgaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacggtgtctttcttgggcatactggctttttcatactacccacccactttctatgaaat 620

                                                                       
Query: 421 cttctgacaatgtttatgctacgtatagggaatgggctgttgtgtatcctgttttacttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttctgacaatgtttatgctacgtatagggaatgggctgttgtgtatcctgttttacttc 680

                         
Query: 481 tgggaaataataca 494
           ||||||||||||||
Sbjct: 681 tgggaaataataca 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |