Query= MSMg01no167_e09.b1 MSMg01no167_e09.b1 CHROMAT_FILE:
MSMg01no167_e09.b1 PHD_FILE: MSMg01no167_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:59 2005
(534 letters)
>mm_chr2_130141447_130142382
Length = 936
Score = 893 bits (462), Expect = 0.0
Identities = 503/518 (97%), Gaps = 6/518 (1%)
Strand = Plus / Minus
Query: 20 agcccggtctacaaagtgagttcaaggacagctagggctacagagaaacccctgttttgg 79
|||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 936 agcctggtctacaaagtgagttcaaggacagctagggctacacagagacccctgttttgg 877
Query: 80 aa--aaaaaa-aaaacaataaaaaataacatgtaaacaatcaaataacactctttatagt 136
|| |||||| |||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 876 aaataaaaaacaaaacaat-aaaaataacatgtaaataatcaaataacactctttatagt 818
Query: 137 gcttggttgcttgttttttgacaagatggcttggaactgttacatagaccaggctgacct 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 gcttggttgcttgttttttgacaagatggcttggaactgttacatagaccaggctgacct 758
Query: 197 caagcttatagaattctgtcagcccctgcttccccagtgttgagattaaagatatgctcc 256
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 caagcttatagaattctgccagcccctgcttccccagtgttgagattaaagatatgctcc 698
Query: 257 accacacccagcttacaatgcttatggtactcaaggctatgattgtagccctacacagtg 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 accacacccagcttacaatgcttatggtactcaaggctatgattgtagccctacacagtg 638
Query: 317 c--aaaaaaaaaaagtcacatgtaaaaggcttggatagttaaaatggccgtttgaatacc 374
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 caaaaaaaaaaaaagtcacatgtaaaaggcttggatagttaaaatggccgtttgaataaa 578
Query: 375 ccaacatatgtacagaaaagcaaaaagatcacacgtgaaaactggttgattatcagcaaa 434
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 577 ccaacatatgtacagaaaagcaaaaagatcacatgtgaaaactggttgattatcagcaaa 518
Query: 435 tgatatgtaggcatggtggaaatgtcattcttggtcaagagttcagggttggcactagag 494
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 517 tgatatgtaggcatggtggaaatgtcattcttggtcaagagttcaggggtggcactagag 458
Query: 495 aggtggctcatcagttaagagcattggttgcttttcca 532
||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aggtggctcatcagttaagagcattggttgcttttcca 420
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 936
Length adjustment: 10
Effective length of query: 524
Effective length of database: 926
Effective search space: 485224
Effective search space used: 485224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no167_e09.g1 MSMg01no167_e09.g1 CHROMAT_FILE:
MSMg01no167_e09.g1 PHD_FILE: MSMg01no167_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:00 2005
(333 letters)
>mm_chr2_130015119_130015851
Length = 733
Score = 644 bits (333), Expect = 0.0
Identities = 333/333 (100%)
Strand = Plus / Plus
Query: 1 actagataacctttctttgttcctcttcccagggtgaccacactgaataagtctttctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actagataacctttctttgttcctcttcccagggtgaccacactgaataagtctttctct 260
Query: 61 gtctttcagtattatttatcactttgattggcagattgagcattgaggaaccatgcttag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctttcagtattatttatcactttgattggcagattgagcattgaggaaccatgcttag 320
Query: 121 ctatagagaaagtttaatccaggaacatccaaaaaccttctgggtctctgtgatctagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatagagaaagtttaatccaggaacatccaaaaaccttctgggtctctgtgatctagct 380
Query: 181 ggaatgcagacatactctggttacagtatcatctggctggaatgcaaacacacccttagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaatgcagacatactctggttacagtatcatctggctggaatgcaaacacacccttagt 440
Query: 241 acacacctttaaatctctaacaatgaaggtaaggttaatttgtagaagaaagcagccatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacacctttaaatctctaacaatgaaggtaaggttaatttgtagaagaaagcagccatg 500
Query: 301 tttgaaagtgatgtctaattgaggggcagacaa 333
|||||||||||||||||||||||||||||||||
Sbjct: 501 tttgaaagtgatgtctaattgaggggcagacaa 533
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space: 234576
Effective search space used: 234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
