Query= MSMg01no167_f09.b1 MSMg01no167_f09.b1 CHROMAT_FILE:
MSMg01no167_f09.b1 PHD_FILE: MSMg01no167_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:04 2005
(491 letters)
>mm_chr2_9256753_9257644
Length = 892
Score = 878 bits (454), Expect = 0.0
Identities = 478/488 (97%), Gaps = 5/488 (1%)
Strand = Plus / Minus
Query: 7 ggaattctgcatt---accttaagccatttggtttattattacctgaagttttgcttctt 63
||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 692 ggaattctgcattaaaa--ttaagccatttggtttactattacctgaagttttgcttctt 635
Query: 64 ggtgtaggcatgatagagattcttgacataagtagttgatttctccatgttaaaaatcaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ggtgtaggcatgatagagattcttgacataagtagttgatttctccatgttaaaaatcaa 575
Query: 124 acatagccatcaaaaatgccattataacaactaaagccaaatgaatatatactgcaatta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 acatagccatcaaaaatgccattataacaactaaagccaaatgaatatatactgcaatta 515
Query: 184 aaataaaagaactcatgcattggttcaatgccacgcatgtaaggttgaaccaaacaggat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aaataaaagaactcatgcattggttcaatgccacgcatgtaaggttgaaccaaacaggat 455
Query: 244 ggagtataaaataggcttaagaggcaattttatttatgtataacaacacatggtcaagat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ggagtataaaataggcttaagaggcaattttatttatgtataacaacacatggtcaagat 395
Query: 304 tttatgaaataatttagcgttgtgtgcataggtcttagaagtatcaaaacaaaaaatgat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttatgaaataatttagcgttgtgtgcataggtcttagaagtatcaaaacaaaaaatgat 335
Query: 364 tgctatacacagaggcagaaaattatttcctttgtaggtccagcaggagtaaggttgtga 423
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgctatagagagaggcagaaaattatttcctttgtaggtccagcaggagtaaggttgtga 275
Query: 424 gcattgtgaggagagggacagcagagttgtaccctttttaatgatcgtaatatttatttt 483
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gcagtgggaggagagggacagcagagttgtaccctttttaatgatcgtaatatttatttt 215
Query: 484 cttgaaca 491
||||||||
Sbjct: 214 cttgaaca 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 892
Length adjustment: 10
Effective length of query: 481
Effective length of database: 882
Effective search space: 424242
Effective search space used: 424242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no167_f09.g1 MSMg01no167_f09.g1 CHROMAT_FILE:
MSMg01no167_f09.g1 PHD_FILE: MSMg01no167_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:04 2005
(309 letters)
>mm_chr2_9181569_9182277
Length = 709
Score = 555 bits (287), Expect = e-162
Identities = 309/329 (93%), Gaps = 20/329 (6%)
Strand = Plus / Plus
Query: 1 tttgaacagtactgagactaaagcattggcatgttgaccattttcaaaataaagaatgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgaacagtactgagactaaagcattggcatgttgaccattttcaaaataaagaatgtg 260
Query: 61 gagaaagctatttcgagaaatatttgtctcagaacaccttaaaatatgccagctatttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaaagctatttcgagaaatatttgtctcagaacaccttaaaatatgccagctatttga 320
Query: 121 cctactacagaggtaagtctcaaaacaatttttaaaaaaccaaatcagaaaactggactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctactacagaggtaagtctcaaaacaatttttaaaaaaccaaatcagaaaactggactc 380
Query: 181 atactaaaagcaacaagacttagaggtgtgtggtgtgtgtgtgtgtgtgt---------- 230
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atactaaaagcaacaagacttagaggtgtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgt 440
Query: 231 ----------acatgtgtgtaatttatgctcacattaggcatttcttttgtggtgaggca 280
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtgtgtgtacatgtgtgtaatttatgctcacattaggcatttcttttgtggtgaggca 500
Query: 281 tagaggctcatgtaccccaagctggcctt 309
|||||||||||||||||||||||||||||
Sbjct: 501 tagaggctcatgtaccccaagctggcctt 529
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space: 210000
Effective search space used: 210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
