BAC Information

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BAC

Clone NameMSMg01-167F19
Chromosome2 (Build37)
Map Location 99,758,428 - 99,882,934
singlet/doubletdoublet
Overlap geneLOC668702
Upstream geneLOC621386
Downstream geneLOC100042907, LOC241572, LOC668705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167F19.T7 (MSMg01no167_f19.b1)MSMg01-167F19.TJ (MSMg01no167_f19.g1)
ACCAG364874AG364875
length712713
length of high quality
(start - end)		660 (40 - 699)638 (76 - 713)
definitionCHROMAT_FILE: MSMg01no167_f19.b1 PHD_FILE: MSMg01no167_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:06 2005CHROMAT_FILE: MSMg01no167_f19.g1 PHD_FILE: MSMg01no167_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,758,428 - 99,759,078)(99,882,297 - 99,882,934)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAAGAGGATCCGCGG
AATTCATGGTCATCATTTACTATGTGGCAAGTTCAGGACTAAGTTACATT
ACATATGATCCTGTCTCATATCAACAAAACAGACAAAACCATGAAACCTA
CAACTTCATTCAAATGTATACACTAAAAACCACAGTTACGTGTTAATTCA
TCTTTTACCTGAAATTTCACTTAACTCAGATGTTTCCTCATTCTGTTATT
TAGGAAATATTGATTGGACTTTATGGATGCTAACTTGATTCCCTACTCAG
TTAAAATAATAACATTCAATGACTGAGAATCTTGAGATTTACAAGTTTTT
CTTTGATAGTAAAGACACTTTTTCTTTTGGTCTCCTGTCTCATTTTCAGG
CATAATATAATTTTAAAATAATTAAATTTTTTCTCAAACATTGAAATTTA
ATTACTAGCCAAAATTAAATAGTATAAATGCTTTCTTAAAGAGTCCCTTA
AACAAGTGCATTTTATGAGATCAGTGCAAGCATGAATATACAATAGAATC
TGTTTATGGGATTTTCTTTGTCCCTATAGTTTTCTCATTATGGACAGTGC
CTGGNGACAATTTCTTCATAATTCTTTTAAGGAATGCTTATACTCATCCT
TCTCATAATATATAAATGGTTTTATTATAACTGCTTTATGTTGATATGGC
TAGAAAGCGATN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTCTGGTATTTTATTAATTGTTG
CAGCTGTTTATGGTAAATAATTTAGTTTATATTTAACATCACTAGTGCCC
TGGGATTATTAAAGTTAAAGATGCAATTAAAGACAATAATAACAATAAAA
GCATAATTGCTAGAATCAGAAAAGATATCAGCAAGCTCTTATAATATTGC
ATCTTTCAGGACTCCCTAGTGTCTTTCCATATGTACATTTTCTTCAACTG
GGAGTCAATATGTCAGTTTACTTATTAAACTTGAATTGAAAATATAAACT
ATACAAAAGCATACTTAGGTGCCAATTAATTACCCACAGATAGATATTTA
ATATATTGAGTATCATTATACTGTTATTCATTCTTAGTATAGTGTAAAGA
ACTTTCTATGCCATTCGATACAGGCTTTACAGAGAAGATTATTACCAAAA
TAAACTTCATCTTGAATGAACTTACAGGTTGTATGCTAGTTTTGTTAAGT
ACTTTTTATTATTCTAATTTTAATTGGTATAAGCTGTACAAATCTGGGGT
ACACAAACACATTATGTATTCTTCAAATCTTCACAAGTATATCTGTCCCC
TAAAAGAACTACTTATCTCTTTTCAGTTAAAATCTCTAAAAATATTTTTA
TGACTTCATGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_f19.b1 MSMg01no167_f19.b1 CHROMAT_FILE:
MSMg01no167_f19.b1 PHD_FILE: MSMg01no167_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:06 2005
         (660 letters)



>mm_chr2_99758219_99759278
          Length = 1060

 Score = 1214 bits (628), Expect = 0.0
 Identities = 645/651 (99%)
 Strand = Plus / Plus

                                                                       
Query: 10  ggaattcatggtcatcatttactatgtggcaagttcaggactaagttacattacatatga 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ggaattcatggtcatcatttactatgtggcaagttcaggactaagttacattacatatga 269

                                                                       
Query: 70  tcctgtctcatatcaacaaaacagacaaaaccatgaaacctacaacttcattcaaatgta 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tcctgtctcatatcaacaaaacagacaaaaccatgaaacctacaacttcattcaaatgta 329

                                                                       
Query: 130 tacactaaaaaccacagttacgtgttaattcatcttttacctgaaatttcacttaactca 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tacactaaaaaccacagttacgtgttaattcatcttttacctgaaatttcacttaactca 389

                                                                       
Query: 190 gatgtttcctcattctgttatttaggaaatattgattggactttatggatgctaacttga 249
           |||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||
Sbjct: 390 gatgtttcctcattctgttatttaggaaatattgcttggactttatggacactaacttga 449

                                                                       
Query: 250 ttccctactcagttaaaataataacattcaatgactgagaatcttgagatttacaagttt 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ttccctactcagttaaaataataacattcaatgactgagaatcttgagatttacaagttt 509

                                                                       
Query: 310 ttctttgatagtaaagacactttttcttttggtctcctgtctcattttcaggcataatat 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ttctttgatagtaaagacactttttcttttggtctcctgtctcattttcaggcataatat 569

                                                                       
Query: 370 aattttaaaataattaaattttttctcaaacattgaaatttaattactagccaaaattaa 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 aattttaaaataattaaattttttctcaaacattgaaatttaattactagccaaaattaa 629

                                                                       
Query: 430 atagtataaatgctttcttaaagagtcccttaaacaagtgcattttatgagatcagtgca 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 atagtataaatgctttcttaaagagtcccttaaacaagtgcattttatgagatcagtgca 689

                                                                       
Query: 490 agcatgaatatacaatagaatctgtttatgggattttctttgtccctatagttttctcat 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 agcatgaatatacaatagaatctgtttatgggattttctttgtccctatagttttctcat 749

                                                                       
Query: 550 tatggacagtgcctggngacaatttcttcataattcttttaaggaatgcttatactcatc 609
           |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 750 tatggacagtgcctggtgacaattgcttcataattcttttaaggaatgcttatactcatc 809

                                                              
Query: 610 cttctcataatatataaatggttttattataactgctttatgttgatatgg 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 attctcataatatataaatggttttattataactgctttatgttgatatgg 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no167_f19.g1 MSMg01no167_f19.g1 CHROMAT_FILE:
MSMg01no167_f19.g1 PHD_FILE: MSMg01no167_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:06 2005
         (638 letters)



>mm_chr2_99882097_99883134
          Length = 1038

 Score = 1218 bits (630), Expect = 0.0
 Identities = 636/638 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttctggtattttattaattgttgcagctgtttatggtaaataatttagtttatattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tcttctggtattttattaattgttgcagctgtttatggtaaataatttagtttatattta 779

                                                                       
Query: 61  acatcactagtgccctgggattattaaagttaaagatgcaattaaagacaataataacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 acatcactagtgccctgggattattaaagttaaagatgcaattaaagacaataataacaa 719

                                                                       
Query: 121 taaaagcataattgctagaatcagaaaagatatcagcaagctcttataatattgcatctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 taaaagcataattgctagaatcagaaaagatatcagcaagctcttataatattgcatctt 659

                                                                       
Query: 181 tcaggactccctagtgtctttccatatgtacattttcttcaactgggagtcaatatgtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tcaggactccctagtgtctttccatatgtacattttcttcaactgggagtcaatatgtca 599

                                                                       
Query: 241 gtttacttattaaacttgaattgaaaatataaactatacaaaagcatacttaggtgccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gtttacttattaaacttgaattgaaaatataaactatacaaaagcatacttaggtgccaa 539

                                                                       
Query: 301 ttaattacccacagatagatatttaatatattgagtatcattatactgttattcattctt 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 538 ttaattacccacagatagatatttaatatattgagtattattatactgttattcattctt 479

                                                                       
Query: 361 agtatagtgtaaagaactttctatgccattcgatacaggctttacagagaagattattac 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 agtatagtgtaaagaattttctatgccattcgatacaggctttacagagaagattattac 419

                                                                       
Query: 421 caaaataaacttcatcttgaatgaacttacaggttgtatgctagttttgttaagtacttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 caaaataaacttcatcttgaatgaacttacaggttgtatgctagttttgttaagtacttt 359

                                                                       
Query: 481 ttattattctaattttaattggtataagctgtacaaatctggggtacacaaacacattat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttattattctaattttaattggtataagctgtacaaatctggggtacacaaacacattat 299

                                                                       
Query: 541 gtattcttcaaatcttcacaagtatatctgtcccctaaaagaactacttatctcttttca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gtattcttcaaatcttcacaagtatatctgtcccctaaaagaactacttatctcttttca 239

                                                 
Query: 601 gttaaaatctctaaaaatatttttatgacttcatgtct 638
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gttaaaatctctaaaaatatttttatgacttcatgtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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