Query= MSMg01no167_k04.b1 MSMg01no167_k04.b1 CHROMAT_FILE:
MSMg01no167_k04.b1 PHD_FILE: MSMg01no167_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:27 2005
(673 letters)
>mm_chr2_104116642_104117714
Length = 1073
Score = 930 bits (481), Expect = 0.0
Identities = 595/675 (88%), Gaps = 66/675 (9%)
Strand = Plus / Plus
Query: 7 ggaattccaaatgtgcaccacccaccatcctcagctctccaatcattttaatcatttatt 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattccaaatgtgcaccacccaccatcctcagctctccaatcattttaatcatttatt 266
Query: 67 attacacattgaatgatatataacgtgctctctgacatgacgatctctgtcatgacgatt 126
||||||||||||| ||||||||| ||| |||||| |||||||||||||||||||||||||
Sbjct: 267 attacacattgaaagatatataatgtgatctctgtcatgacgatctctgtcatgacgatt 326
Query: 127 aggtagctatgatcctcacatgaaggtggctcagtgtcacagctcagagtgtggggtttg 186
|||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 327 aggtagctatgatcttcatatgaaggtagctcagtgtcacagctcagagtgtggggtttg 386
Query: 187 gagttcccagtcagtccaactacctcacaccagctgtataaactgaggcaagttatcctg 246
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gagttcccagtc----caactacctcacaccagctgtataaactgaggcaagttatcctg 442
Query: 247 tcccttggggcctcttccttttcaaggtatggctgatcatatccatctcgaaaagcttaa 306
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 443 tcccttggggcctcttccttttcaaggtgtggctgatcatatccatctcgaaaagcttaa 502
Query: 307 aggcattaatccattaccgtagcccggaatatggtaaaaaaatattatcatcaaaaatgt 366
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 503 aggcattaatccattagcgtagcccggaatatggtcaaaaaatattatcatcaaaaatgt 562
Query: 367 agttattatcataaaacatcttaaaatataaaataaaattttaaaataaaaataaaataa 426
||||||||||||||||||
Sbjct: 563 agttattatcataaaacag----------------------------------------- 581
Query: 427 aaaataaaaaatatcttaaaaggctttggggacacatctttcccagaacatcaatggtag 486
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 -------------tcttaaaaggctttggggacacatctttcccagaacatcaatggtaa 628
Query: 487 gtctttacactctgacttctgtcattggcttttctgatccactc--------tgtccttt 538
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 629 gtctttacactctgacttctgtcattggcttttctgatgcactcggaatctctgtccttt 688
Query: 539 cttagcatgattctgcctgttttcttccagtgagcccctgagaaagtcactcatttaaca 598
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ctcagcatgattctgcctgttttcttccagtgagcccctgagaaagtcactcatttaaca 748
Query: 599 ctcttttcttttcttgttttggacacatcatgtcccaggttggcctttaactctcttcgg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ctcttttcttttcttgttttggacacatcatgtcccaggttggcctttaactctcttcgg 808
Query: 659 agcagatgccttgca 673
|||||||||||||||
Sbjct: 809 agcagatgccttgca 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no167_k04.g1 MSMg01no167_k04.g1 CHROMAT_FILE:
MSMg01no167_k04.g1 PHD_FILE: MSMg01no167_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:27 2005
(498 letters)
>mm_chr2_104258003_104258900
Length = 898
Score = 940 bits (486), Expect = 0.0
Identities = 495/498 (99%)
Strand = Plus / Minus
Query: 1 tctcttcctctctctactttctctgcattctcagatatatggcttccttgactctcttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tctcttcctctctctactttctctgcattctcagatatatggcttccttgactctcttct 639
Query: 61 ctcttccttccccctctacttggcatcattaggtttccactgttgagtcaacaccgttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ctcttccttccccctctacttggcatcattaggtttccactgttgagtcaacaccgttcc 579
Query: 121 tctcctctcccctcccctccttgccttggctcagacctgagactttcgtgttatgtgacc 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tttcctctcccctcccctccttgccttggctcagacctgagactttcgtgttatgtgacc 519
Query: 181 gccatcctgtcccctaagctgtccatgtgttcctaccttattttctgcccacgtgatctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gccatcctgtcccctaagctgtccatgtgttcctaccttattttctgcccacgtgatctt 459
Query: 241 tctagaatttacttttcatccatttagtggcagtggagatgacaagaaatttggagccag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tctagaatttacttttcatccatttagtggcagtggagatgacaagaaatttggagccag 399
Query: 301 gggaggaggtgatacacatgtacggtgtagacccaaaccgagctctgcctaacaaaatta 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 398 gggaggaggtgatacacatgtacggtgtagacccaaagcgagctctgcctaacaaaatta 339
Query: 361 gcatcgagaaaagtcccgaccagttcagaaatcttcagttcagcaacattcagttgctgt 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gcatcgagaaaagtcccaaccagttcagaaatcttcagttcagcaacattcagttgctgt 279
Query: 421 ccagccctgaggaggtcgtcagcttccctatgatgtgtgctccctcggaacttgtggttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ccagccctgaggaggtcgtcagcttccctatgatgtgtgctccctcggaacttgtggttt 219
Query: 481 cttgtacagaagagctac 498
||||||||||||||||||
Sbjct: 218 cttgtacagaagagctac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
