BAC Information

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BAC

Clone NameMSMg01-168H14
Chromosome2 (Build37)
Map Location 118,047,989 - 118,048,249
singlet/doubletsinglet
Overlap geneFsip1
Upstream geneLOC624574, 2610510H03Rik, Rasgrp1, Thbs1
Downstream geneGpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168H14.T7 (MSMg01no168_h14.b1)MSMg01-168H14.TJ (MSMg01no168_h14.g1)
ACCAG365646AG365647
length733708
length of high quality
(start - end)
269 (43 - 311)54 (231 - 284)
definitionCHROMAT_FILE: MSMg01no168_h14.b1 PHD_FILE: MSMg01no168_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:44 2005CHROMAT_FILE: MSMg01no168_h14.g1 PHD_FILE: MSMg01no168_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCCGCG
GAATTCGCTTCCTTTAAAATTAGGAATATGACCTTCTCTTACTTTTACAT
TAGGAATGTGATGCCAATGAAGAAAGAAATACGGAACCAACTCCCGGAGA
GAAGATACTCCGGGACCGCAAAGAGCAAAGGGACCGGGAGTCTCGGCTGA
GAGCCATCGATGGCAAGCTGAAAGAGCTCAGTGAACAGGTAGGGTAAGGT
CTTCCCGCCTACAGCCTAATGGGTGCCTTCACTGCACTCAACAACAACAA
CAACAACAACAACTTTTTTTTTACAAAACATTGAGTTAGATTGCTTTTAT
GTGTTGAATTGTTGCCGGAACATGNTCCCCTTATTTTATTTAAAAGATAA
AAATATTCATAGGCACAAAAAAAAAATAATACAGGGGGTGGGGGGGTATA
ACATAAAAATACTATCTGAACTCATGATTCATGCATGAACTTCATGGTCT
GTGTCTAGCAGTAACATGCATGTTCTTTTATTTTGAAAAAATTTTATGAA
CTTTATGAAGTTTAACTTTACCACTTAAATATTCCTACCTTTTGTTTACA
ACATACACCTTGCCAATTTTGATATAGTATTATTTTATTTTATGCCTGTA
TTCTTTACCCTACTGATTTTTATTATGTTACATCACCCTTTGACGACCTG
CTTTTTATTGTCCCATTTTTTCACGCTGATTTT
GGCGGAACGGCAGCGAGGAGGNNGAANNANAGATTTCCCCAAAAAGAAGG
GANNGAGNAAAGACGGGCAANANCNNCCNNGGAAGAAGGNANACGGNGCC
CCANNAAAAGAAAAAAAAAGCNNCCAAAAAGNNCAACCAAAAAGNNGGAA
ACNNCNCCAAGGNNNNAANAAAGCAGGGGGGGGNGCGANGGACACAGNCG
GCAGGGACGGCGNNGNNAAGGAGAAATTTTTAATTCTAAACTAGAATGGT
CATTCTCAGGTGAGGACTTCAGATGCCCGCCCTNGATGTTTTTTTTTTTT
TTCAGACNAGNNGCAAAGCAGACAAGAAANAATTTTTTTTTTTTTTCCCC
AAACGACCCCCCCAAGGAGGGAGAGNGNNNNAGGNNGNNGNNNNNNAAAA
ANNNGAAAANNAAAAGGGGNNGGANNNGAGGANGNGNANNNAGANNGANN
AGANAAGGNNANAAANNAAAGAAGAGGGAAAGAGGANAAAAAAAAAAGGA
AAAAGAGAANAGAGAAGAGGAGAAGAAAGGANGAGAAGANGGAAGAAGAG
AAGAGAGAAANAAGAGAGAAGGGAAAAAAGAAAAAGGAAGAAAAAGGAGG
GAAAAAAGANAAAAAAAAGATTTTTTTTTGAGGAAAAGGGGGGAAAAAAA
AAATGAGGGGATGATGAAAGAATTTTTTTATGATATGGATTAAATTAAAT
TGATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_h14.b1 MSMg01no168_h14.b1 CHROMAT_FILE:
MSMg01no168_h14.b1 PHD_FILE: MSMg01no168_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:44 2005
         (269 letters)



>mm_chr2_118047805_118048473
          Length = 669

 Score =  489 bits (253), Expect = e-143
 Identities = 259/261 (99%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattcgcttcctttaaaattaggaatatgaccttctcttacttttacattaggaatgtg 68
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 445 gaattcgcttcctttaaaattaggaatatgaccttctcttacttttaaattaggaatgtg 386

                                                                       
Query: 69  atgccaatgaagaaagaaatacggaaccaactcccggagagaagatactccgggaccgca 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgccaatgaagaaagaaatacggaaccaactcccggagagaagatactccgggaccgca 326

                                                                       
Query: 129 aagagcaaagggaccgggagtctcggctgagagccatcgatggcaagctgaaagagctca 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagagcaaagggaccgggagtctcggctgagagccatcgatggcaagctgaaagagctca 266

                                                                       
Query: 189 gtgaacaggtagggtaaggtcttcccgcctacagcctaatgggtgccttcactgcactca 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 gtgaacaggtagggtaaggtcttcccgcctacagcctaatgggtgccttcactgcacaca 206

                                
Query: 249 acaacaacaacaacaacaaca 269
           |||||||||||||||||||||
Sbjct: 205 acaacaacaacaacaacaaca 185


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)