BAC Information

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BAC

Clone NameMSMg01-168P17
Chromosome2 (Build37)
Map Location 82,229,704 - 82,230,009
singlet/doubletsinglet
Overlap geneA130030D18Rik
Upstream geneLOC100040704, Zfp804a, LOC100041308
Downstream geneEG624362, LOC433550, LOC269292, LOC433440, Fsip2, LOC545429
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168P17.T7 (MSMg01no168_p17.b1)MSMg01-168P17.TJ (MSMg01no168_p17.g1)
ACCAG365997AG365998
length704766
length of high quality
(start - end)
314 (44 - 357)232 (80 - 311)
definitionCHROMAT_FILE: MSMg01no168_p17.b1 PHD_FILE: MSMg01no168_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:33 2005CHROMAT_FILE: MSMg01no168_p17.g1 PHD_FILE: MSMg01no168_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTAATTTAGACCTTTTTTTTCCTCCACATTTTTATCTACTCTCACT
CCTTTGGAAATATCATCCAGTGGCTTAGTGTTAAATGCCATCTATATGTG
ATCATGCCCAATTTAAATGTCCCACCCAAACTTCGCCTGGTATAATCAGA
AGACTAGCTGACTTGCCTTTGAATGATTGCTTCACTGTTTAAGGCTGCAC
TTTAATCTTCTCACTGAAAAACACTATTTTATTTTTAAAGTTTAGCTCCT
GCACTTGCCTCTTATGTCTACTTAACTAATGTCTTCATTTTCTTCTTCTT
TGTTCTTTTTGTCTAACCCTCCCCTCAATCATGGATTCTAGCCTGACTAC
TTTGTAAGTGTAGCAATCTGTCACATGTATCCCTTATAAGCTTCCTACTC
AAAACTGTTCATGTCATTAAGATTACATTTGTTTTAGATACCTATAGCCC
TTATATCAACAATACTATATTTAGAAAATTTCCCTAAATTTGGCCTGTGA
GTATGATGAACTTCTTAATTTGAGGTAAATAATTTCTCTATATTACTGTG
TTTATTCCATTTTGTGGACAGACATATCAAAGGAATTGAGAGAATTTATG
CATATAATTTGAGGATTATTTTTATAGGAATATGTGATAAGTCTCTCTCT
CCTG
NATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACATCCAGAACTACACA
GAAAAATTCTGTCTAAAAACAGGCAAGAATAAAGGAAGACGTTTGGTATT
ATAGTGGGTTGAATAGGTTTGTCCGCATAGATTCTTGTGTTTGAAGCTTG
GCTCACAGTGAATTGCACTATTAGGATGTGTGGCTTTGTCTGAATAGGTG
TGACCTTGTTGGAGTAGATGTGTCACTATGGGGGGTGGGTGAGCTTTGAG
GTCTCCTAGTGCTCACAACTTTTTTTTTGTGTGGAAAAGTCCCCTTCTCT
TTTCAGTTTTTAAATGGAATTCCCGGGGCAGAGCCCCCATGTTTTTTTAT
TTTTTGTNTTTTTTNTTTGTGGGAAAAAAAAAAAAAAAAAAGTGTTGGGG
GGTGGGGTGGGGTTTTGGTNTTTTTTTTTGGTTGGTATATGTGTGTTTTG
TTTGAATTGAAGATTATTAGAGAAGATTAGTTTTGGTGAATGGGTGTTTT
TTATACATTTTTAATGTTTTTATATTTGGGGTCGCCCTTTTATTACAATT
TCCCCCTTCCTTCTCCCTATTTATACGCTTTTTTTCTTTGTTTTCCCTCC
CGCCCCTCCCCTTTTTTCTTATCTCACCCCCCCCCCCCGCTTAAATAACT
TAACATTTCGCACCCCCGAAAAATACTTAGACCCCGATCTTCGCTATTTT
TTTTCTTCAACATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_p17.b1 MSMg01no168_p17.b1 CHROMAT_FILE:
MSMg01no168_p17.b1 PHD_FILE: MSMg01no168_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:33 2005
         (314 letters)



>mm_chr2_82229360_82230073
          Length = 714

 Score =  571 bits (295), Expect = e-167
 Identities = 304/307 (99%), Gaps = 1/307 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctaatttagaccttttttttcctccacatttttatctactctcactcctttg 63
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct: 650 ggaattctctaatttagacctttttttt-ctccacatttttatctactctcactccttta 592

                                                                       
Query: 64  gaaatatcatccagtggcttagtgttaaatgccatctatatgtgatcatgcccaatttaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gaaatatcatccagtggcttagtgttaaatgccatctatatgtgatcatgcccaatttaa 532

                                                                       
Query: 124 atgtcccacccaaacttcgcctggtataatcagaagactagctgacttgcctttgaatga 183
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 atgtccctcccaaacttcgcctggtataatcagaagactagctgacttgcctttgaatga 472

                                                                       
Query: 184 ttgcttcactgtttaaggctgcactttaatcttctcactgaaaaacactattttattttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ttgcttcactgtttaaggctgcactttaatcttctcactgaaaaacactattttattttt 412

                                                                       
Query: 244 aaagtttagctcctgcacttgcctcttatgtctacttaactaatgtcttcattttcttct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aaagtttagctcctgcacttgcctcttatgtctacttaactaatgtcttcattttcttct 352

                  
Query: 304 tctttgt 310
           |||||||
Sbjct: 351 tctttgt 345


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)