BAC Information

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BAC

Clone NameMSMg01-169B06
Chromosome2 (Build37)
Map Location 74,451,430 - 74,451,736
singlet/doubletsinglet
Overlap genenone
Upstream geneChn1, Atf2, Atp5g3, LOC667729, LOC100040172, Lnp, LOC100040519
Downstream geneEvx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423, LOC100040324
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169B06.T7 (MSMg01no169_b06.b1)MSMg01-169B06.TJ (MSMg01no169_b06.g1)
ACCAG366061AG366062
length746773
length of high quality
(start - end)
311 (46 - 356)---
definitionCHROMAT_FILE: MSMg01no169_b06.b1 PHD_FILE: MSMg01no169_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:41 2005CHROMAT_FILE: MSMg01no169_b06.g1 PHD_FILE: MSMg01no169_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGACCACCGACTCAGGGATGGCTCCATCCACAATGGGCTGGGCC
CTCCTCAATCAGTAACTGTTTAGGAAAATGTCCTACAGCCTGATCTTATG
GAGACATTTTCTCAATTGAGGTCTCCTTTCAGATAACTCTAGTTTGTGTG
TCCCGTTGACATGACTAGCCAGCACCCCCAGCCGACTTTTTGATACCTCC
CAATAGAGCCATCTTTTCTGAGTCCACCACAGGATGCAACCGTTGATGAA
GTCAGAAACTTCATGGTCCAGGTACTTTTCTATGAATATCACTGCTGTGA
GAAACAATTTTTTAAGTCTGCCCGCTCACATCTCATTCCCAGAGCACAAT
TGTCACGTCACAAACTCCCCCAAAAACGAACTGTGAGAGTTTTCTTTTTA
AAGTTTGATTTCTTATTACTGAATTATTTCATACCAATTGCTTTGAAAGT
TAAACATTTAAATTTCTGTCACTTCAAAATTCTACTTTAAATTTTATTTT
GTAGAAGTAATTTTATACTTTTAAATANAAGTGTATTTTATACTTTGGCA
CAGTGTTGCGGGAAACAAATGTTAGAATTTATTTCTTTTGACAGATTTCC
AACTTTGTTATAGTTTTACATATCTTTTTCAGATGCCAAGATGGAATTTT
TAATTCTTCCAGGAATAGTTGGAAATGTGTGTTTAATTCTAAGTCT
AGGCAGGAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATTCCTAATTGGCGGCCCTT
TTCCAAAGTAAGAGGAACTGGGTAAAAAAAAAAAAACCAATGGTTTAACC
AAGGGACCCCGATCTTCTAAGGAGAAGCCCCGGCTAAGCCGGCCAAAGGA
ACCGGAGAAAAAGGACTTGGTAAGGAAAAGTCTAACCGGAAAGTTAAAAA
GGGGGCCCCTTCCGGAGCCCCAGAACGGTTCCGGATTCCATGGCAACTTG
GCCTTTAAAAAAAAAAAAAAATAAGGAATTTGTTTAAATAATAACCAAGG
CCCCCAAAAAGGGGTTTTANGTGGTTTTCCCAACAACCCCCGTGGGTTTT
TTTTTTTTGGTTGTTAAAAGTTTTGGCCCCAGGCAAAAAAAAAAAAAACT
CGGGGGGGGGGGGGGACCATTTTTCCTGGCTTAAACCGCCCCTCTTCCTT
CCAAAATTAGAAAGCCAAGTCCCAGTCCCTGGCCACAGGAAACGGCATAA
CTTGCGACCACCACTCTCCCCCCCACAGGGCCCCTTTAAGTAACACCCCC
CTCCGAAATCCCCGAACGCCGCCCTGGCCTTGGCCAAAGCCCAGTCTTTG
GCCCAATATTTCCATCTCAACCTTCATAGCTCCCCCCACCCCCCGCCAAT
CTCCCATTACCCCCTTTCCTGCCCCTCTTCGCCCCCCCCCATTAACCTCC
CCCCCNTCCCCTTTGTACCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_b06.b1 MSMg01no169_b06.b1 CHROMAT_FILE:
MSMg01no169_b06.b1 PHD_FILE: MSMg01no169_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:41 2005
         (311 letters)



>mm_chr2_74451050_74451760
          Length = 711

 Score =  563 bits (291), Expect = e-165
 Identities = 303/307 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggaccaccgactcagggatggctccatccacaatgggctgggccctcctcaat 64
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 687 gaattcaggaccaccgactcagggatggctccatccacaatgagctgggccctcctcaat 628

                                                                       
Query: 65  cagtaactgtttaggaaaatgtcctacagcctgatcttatggagacattttctcaattga 124
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 627 cagtaactgtttaggaaaatgtcctacagcctgatcttatggagacgttttctcaattga 568

                                                                       
Query: 125 ggtctcctttcagataactctagtttgtgtgtcccgttgacatgactagccagcaccccc 184
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 567 ggtctcctttcagataactctagtttgtgtgtcccgttgatatgactagccagcaccccc 508

                                                                       
Query: 185 agccgactttttgatacctcccaatagagccatcttttctgagtccaccacaggatgcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 507 agccgactttttgatacctcccaatagagccatcttttctgagtccaccacgggatgcaa 448

                                                                       
Query: 245 ccgttgatgaagtcagaaacttcatggtccaggtacttttctatgaatatcactgctgtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ccgttgatgaagtcagaaacttcatggtccaggtacttttctatgaatatcactgctgtg 388

                  
Query: 305 agaaaca 311
           |||||||
Sbjct: 387 agaaaca 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)