BAC Information

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BAC

Clone NameMSMg01-169E11
Chromosome2 (Build37)
Map Location 14,747,488 - 14,747,774
singlet/doubletsinglet
Overlap geneCacnb2
Upstream genePtpla, Stam, 2010003H20Rik, Mrc1, Slc39a12, LOC100041164, LOC625335, LOC625342
Downstream geneLOC100041220, Nsun6, Arl5b, LOC633061, LOC667329, LOC227588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169E11.T7 (MSMg01no169_e11.b1)MSMg01-169E11.TJ (MSMg01no169_e11.g1)
ACCAG366198AG366199
length696709
length of high quality
(start - end)
309 (46 - 354)288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no169_e11.b1 PHD_FILE: MSMg01no169_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:55 2005CHROMAT_FILE: MSMg01no169_e11.g1 PHD_FILE: MSMg01no169_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCTCCGTTCCTTAAAACCTAGTTGATGTTCAGACCAATTTCTCT
TATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCC
AAGATCACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCA
GGAATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCACTA
TATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTGGATGCAG
AAAAAGCATTTGTTTTTATCCAACACCCATTCATGATAAAAGTTCTGGAA
AGATCATGAATTCACGCGTGACATTTACCCAAGATAAAAGCAATCTACAG
CAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCC
CACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCACCCTACCTTTTC
AACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGAT
CAAGGGGATACAAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAG
ATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTC
CTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATTN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAAGTGCATTCAACCAATGATTTTGA
GTCATTTCAGCAAAGACATTGTGCATAATAATGGCAGAGGTGTTTAACAG
TAGATTTAACAGTAGTGGTAATCTCTATGACTCTAAATGAGTTATTTATT
TCCTGTTCATCTCATTCCTGCCTTGAAGGGCTGAGGAATTTTCCCAAGGA
GATTTTTTCTTTTGAACTTTTTTTCCCAAGCCTGGGCTTTCTGTTCCCTT
TGGCCTGGGTAGCTCTCATGTTAGGGTTTCATTGTTGTTTGGTAGGTTTG
GGGTTAGTGGATTTTTTTTTCTACGCCCCCCCACCCCAGTCGAAAAGTCA
GGATCCTCATGCTTCAGCCTCCCAAGTGCTGGAATCATGGGCAAGCAAGC
ACCAGCAGTGCTGGGATCATGGGCAAGCAAGCACCAGCAGTGCTGGGATC
ATGGGCAAGCAAGCACCAGCAGTGCTGGGATCATGGGCAAGCAAGCACCA
GCAGTGCTGGGATCATGGGCAAGCAAGCACCAGCATACCTCACTTGCTTA
GTTTTAAGGCCTCAGATGCCTGAGTACCTGAAATGACAGGTCTATGTCTA
CTTTTGTTCTTATGAGTTTGTGCCTGTGCTTGAATAAGACTAATAAATGA
ATGGATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_e11.g1 MSMg01no169_e11.g1 CHROMAT_FILE:
MSMg01no169_e11.g1 PHD_FILE: MSMg01no169_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:55 2005
         (288 letters)



>mm_chr2_14747288_14747975
          Length = 688

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagtgcattcaaccaatgattttgagtcatttcagcaaagacattgtgcataataatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 taagtgcattcaaccaatgattttgagtcatttcagcaaagacattgtggataataatgg 260

                                                                       
Query: 61  cagaggtgtttaacagtagatttaacagtagtggtaatctctatgactctaaatgagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaggtgtttaacagtagatttaacagtagtggtaatctctatgactctaaatgagtta 320

                                                                       
Query: 121 tttatttcctgttcatctcattcctgccttgaagggctgaggaattttcccaaggagatt 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttatctcctgttcatctcattcctgccttgaagggctgaggaattttcccaaggagatt 380

                                                                       
Query: 181 ttttcttttgaactttttttcccaagcctgggctttctgttccctttggcctgggtagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttcttttgaactttttttcccaagcctgggctttctgttccctttggcctgggtagct 440

                                                          
Query: 241 ctcatgttagggtttcattgttgtttggtaggtttggggttagtgga 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcatgttagggtttcattgttgtttggtaggtttggggttagtgga 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)