Query= MSMg01no169_m03.b1 MSMg01no169_m03.b1 CHROMAT_FILE:
MSMg01no169_m03.b1 PHD_FILE: MSMg01no169_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:32 2005
(315 letters)
>mm_chr2_83480764_83481479
Length = 716
Score = 586 bits (303), Expect = e-172
Identities = 310/315 (98%), Gaps = 5/315 (1%)
Strand = Plus / Plus
Query: 5 gaattctttgttaactccactgactcacacttactgatccctgatttatgtaattcatca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgttaactccactgactcacacttactgatccctgatttatgtaattcatca 264
Query: 65 tggttttgtgaaaaaataagaacaagatataatcaccaatcctaggccattcataaactc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggttttgtgaaaaaataagaacaagatataatcaccaatcctaggccattcataaactc 324
Query: 125 cagaaaagaataaaatccttatagagtttagacttagcttctaagacagtaactgtatt- 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagaaaagaataaaatccttatagagtttagacttagcttctaagacagtaactgtattt 384
Query: 184 ----aaaaaaaaaaataggggagcagggcagggggaagggtataggaggctttggggata 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaaaaaaaaaaaaataggggagcagggcagggggaagggtataggaggctttggggata 444
Query: 240 gcatttgaaatgtaaatgaagaaaataaaaaatagtaatgcctgctagagtaggattgtc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcatttgaaatgtaaatgaagaaaataaaaaatagtaatgcctgctagagtaggattgtc 504
Query: 300 actaatgtaactata 314
|||||||||||||||
Sbjct: 505 actaatgtaactata 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 716
Length adjustment: 9
Effective length of query: 306
Effective length of database: 707
Effective search space: 216342
Effective search space used: 216342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no169_m03.g1 MSMg01no169_m03.g1 CHROMAT_FILE:
MSMg01no169_m03.g1 PHD_FILE: MSMg01no169_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:32 2005
(100 letters)
>mm_chr2_83645922_83646421
Length = 500
Score = 163 bits (84), Expect = 4e-45
Identities = 96/100 (96%)
Strand = Plus / Minus
Query: 1 tctcaaatggggatggatgccaccttggacttctgttgccctacaacccccagttgctct 60
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 300 tctcaaatggggatggatgccaccttggccttctgttgccctacaagaaccagttgctct 241
Query: 61 accaatatatactttgccactaaattccctcctcggggtt 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 accaatatatactttgccactaaattccctcctcggggtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 100
Length of database: 500
Length adjustment: 8
Effective length of query: 92
Effective length of database: 492
Effective search space: 45264
Effective search space used: 45264
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
|
