BAC Information

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BAC

Clone NameMSMg01-169O09
Chromosome2 (Build37)
Map Location 141,220,118 - 141,324,466
singlet/doubletdoublet
Overlap genenone
Upstream gene2900006F19Rik, Flrt3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169O09.T7 (MSMg01no169_o09.b1)MSMg01-169O09.TJ (MSMg01no169_o09.g1)
ACCAG366630AG366631
length702712
length of high quality
(start - end)
306 (45 - 350)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no169_o09.b1 PHD_FILE: MSMg01no169_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:43 2005CHROMAT_FILE: MSMg01no169_o09.g1 PHD_FILE: MSMg01no169_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,220,118 - 141,220,416)(141,324,180 - 141,324,466)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
CTTCAAACAAGCATCTTCATTTCATTCTACAAATTATATGGAGGCTCCTG
CATGGAACTATAGAGAAATAGTGTGCCGGGCTCTCTAGGACTGGAACCTT
AGCTTGGACTAGGGCTTGGCTTCTTGGCTGTTCTCTTCCAGTGTTCCTTT
TGTCTGTCTCTCTTGCTCTAGCTGCGTGTCATTCTGAAATAGAAGGACAT
ACCCCTTAGCATGCTAGGTCTTCCACATTTAAAGGATCTTCAAGGCTTGA
TGTTAGGTTGCTCTTTTTGTTTAAGCCTTCTTTTGGATATCTATGATATG
ATNNACTTCCTTACCGAGNTACATANCCTGAGGTCTGAGTTTGTTCTTGG
CTCCCAGCTTAGGACCATGAAAAAAATGTGGATAAGGAAGTCTGTGTTCT
CCTAAGCTTAAATCTACAAAGACAACAATTAACTGAGTGGCCACAATGAA
ACCAGCTCCAATGATGGTGGAACAATGATGATTGGAACACAGACGAGACA
TAATTGAGATGACATATAAACAGAGACCTGAGATCTAAGTGTGAGTAGAT
AGTTTTTACTAGGAGGGAAAAGCAAAGAGTATCCAGGAGAGGGAACAGCA
TGAACCCAAGCCTGGAAGTGAAAGGCTGCCATCTTCAGGAAGATTTCTCC
TA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCCCTCTGTCTAACTGCTAAGGGA
CCTCTATAACCAGCAAAGGAAAAAAAAGAATGGTTCATGTTTCTAATGGA
GCCAATTACTGTCTTCAGAGTTAGGCTAATTTACTTACTTACTAAGTCAC
TAAAGCCTGGAACAGGGACTGGGATTGTGGGTATATAACATGCCCTTTAT
AACCACAGTTGGATACCCTAATGTCCTCTGGTATGACCTCAGGCTGCTGC
CTAGAAAATGTTTTCCTAACTAATCCTTGCACCCACATAATCATGTTTTG
AATTTTTGCCCCTTCTACTTATTTCCNAAGCTGTCCACTACCCATTTTAA
TAAGATGTGACATCCAGTTATATCTTGCTTAATATACACAATGATACTCT
TGTAGAATGACTCTTACTTCGTTTTCCATATTTAGTTTATGACTATGACC
TAATGTGCCCTTACTTGATCCTAAACTCCTTTGTCTCCATTACTTTTCTT
GTTGCTGGAACATGACACCTGAAAAAGAAACTCATGGAGAGAAGGATTTG
CTTGGCTCAGGGGGAGAGGGCATGGTGGTGGGATAGCTTAAGTTAGCCAG
TCACACTGCATCTGCATTTAACATACAGAGAGAGAAGAATGCTAGAACTC
TACTTGTTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_o09.b1 MSMg01no169_o09.b1 CHROMAT_FILE:
MSMg01no169_o09.b1 PHD_FILE: MSMg01no169_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:43 2005
         (306 letters)



>mm_chr2_141219911_141220616
          Length = 706

 Score =  524 bits (271), Expect = e-153
 Identities = 292/299 (97%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttcaaacaagcatcttcatttcattctacaaattatatggaggctcctgcatggaactat 67
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 208 ttcaaacaagcatcttcatttcattctacaaattatatggaagctcctgcatggaactat 267

                                                                       
Query: 68  agagaaatagtgtgccgggctctctaggactggaaccttagcttggactagggcttggct 127
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agagaaatagtgtgcctggctctctaggactggaaccttagcttggactagggcttggct 327

                                                                       
Query: 128 tcttggctgttctcttccagtgttccttttgtctgtctctcttgctctagctgcgtgtca 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tcttggctgttctcttccagtgttccttttgtctgtctctcttgctctagctgcgtgtca 387

                                                                       
Query: 188 ttctgaaatagaaggacataccccttagcatgctaggtcttccacatttaaaggatcttc 247
           ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttctgaaatggaaggacagaccccttagcatgctaggtcttccacatttaaaggatcttc 447

                                                                      
Query: 248 aaggcttgatgttaggttgctctttttgtttaagccttcttttggatatctatgatatg 306
           |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||
Sbjct: 448 aaggcttgatgttaggttgctctggctgtttaagccttcttttggatatctatgatatg 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no169_o09.g1 MSMg01no169_o09.g1 CHROMAT_FILE:
MSMg01no169_o09.g1 PHD_FILE: MSMg01no169_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:43 2005
         (289 letters)



>mm_chr2_141323980_141324668
          Length = 689

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctccctctgtctaactgctaagggacctctataaccagcaaaggaaaaaaaagaatggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctccctctgtctaactgctaagggacctctataaccagcaaaggaaaaaaaagaatggtt 428

                                                                       
Query: 61  catgtttctaatggagccaattactgtcttcagagttaggctaatttacttacttactaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 catgtttctaatggagccaattactgtcttcagagttaggctaatttacttacttactaa 368

                                                                       
Query: 121 gtcactaaagcctggaacagggactgggattgtgggtatataacatgccctttataacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gtcactaaagcctggaacagggactgggattgtgggtatataacatgccctttataacca 308

                                                                       
Query: 181 cagttggataccctaatgtcctctggtatgacctcaggctgctgcctagaaaatgttttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cagttggataccctaatgtcctctggtatgacctcaggctgctgcctagaaaatgttttc 248

                                                          
Query: 241 ctaactaatccttgcacccacataatcatgttttgaatttttgcccc 287
           |||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 247 ctaactaaaccttgcacccacataatcatgttttgaattttttcccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)