Query= MSMg01no169_o15.b1 MSMg01no169_o15.b1 CHROMAT_FILE:
MSMg01no169_o15.b1 PHD_FILE: MSMg01no169_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:44 2005
(258 letters)
>mm_chr2_100658558_100659215
Length = 658
Score = 406 bits (210), Expect = e-118
Identities = 252/270 (93%), Gaps = 12/270 (4%)
Strand = Plus / Plus
Query: 1 tttattcctgccgacttctattattaaatataagcagtaaatcaataataaacgagctaa 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttattcctgccaacttctattattaaatataagcagtaaatcaataataaacgagctaa 260
Query: 61 tgacaagaagcttaattactgctcaagtctacaattcaatttaaaagttcagatgaaaat 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacaggaagcttaattactgctcaagtctacaattcaatttaaaagttcagatgaaaat 320
Query: 121 actgatttcagtaagtaaccagatgctattgagaactataac----tat-a-aca---c- 170
|||||||| |||||||||||||||||| ||||||||||||| ||| | ||| |
Sbjct: 321 cctgatttcggtaagtaaccagatgctactgagaactataacacagtatgatacaggaca 380
Query: 171 -tat-aagagcgtaaaatctgataaacatttagtaatggaaactagatcctgaatagtta 228
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatcaagagcgtaaaatctgataaacatttagtaatggaaactagatcctgaatagtta 440
Query: 229 ggaataacagggaatgagaatggatttgca 258
||||||||||||||||||||| ||||||||
Sbjct: 441 ggaataacagggaatgagaatagatttgca 470
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 658
Length adjustment: 9
Effective length of query: 249
Effective length of database: 649
Effective search space: 161601
Effective search space used: 161601
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no169_o15.g1 MSMg01no169_o15.g1 CHROMAT_FILE:
MSMg01no169_o15.g1 PHD_FILE: MSMg01no169_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:44 2005
(290 letters)
>mm_chr2_100811666_100812354
Length = 689
Score = 485 bits (251), Expect = e-141
Identities = 278/287 (96%), Gaps = 1/287 (0%)
Strand = Plus / Minus
Query: 1 aaggtgatggattttatgttatcatttgatccttcttattttttaagttctcgttttcct 60
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 486 aaggtgatggattttatgttatcatttgatacttcttattctttaagttctcgttttcct 427
Query: 61 attttaaaacagctcttatcatagttatatttaaaactatatttccattttctcaaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 attttaaaacagctcttatcatagttatatttaaaactatatttccattttctcaaattt 367
Query: 121 tcaggaaattagaatagtgggattcatacttcctgtttcaaaaagtgggtataattttaa 180
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 366 tcaggaaattagaatagtgggattcatacttcccatttcaaaaagtgggtataattttaa 307
Query: 181 tcttatgatcccctatgtttcattttgaaaaatgaccttgtatttcagataaactttgca 240
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 306 tcttatgttcccctatgtttcattttgaaaaatgaccttgtatttcacataaactttgca 247
Query: 241 atgaagccccttgagaaactatgtggctattgcttgaatgtgtctta 287
||||||||||||||||||||||| |||||| || |||||||||||||
Sbjct: 246 atgaagccccttgagaaactatgaggctat-gcctgaatgtgtctta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 689
Length adjustment: 9
Effective length of query: 281
Effective length of database: 680
Effective search space: 191080
Effective search space used: 191080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
