BAC Information

Click to search

BAC

Clone NameMSMg01-170H18
Chromosome2 (Build37)
Map Location 58,373,693 - 58,374,012
singlet/doubletsinglet
Overlap genenone
Upstream geneGalnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062, Acvr1
Downstream geneLOC674940, Upp2, BC062650, Pkp4, LOC625354, 2310032F03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170H18.T7 (MSMg01no170_h18.b1)MSMg01-170H18.TJ (MSMg01no170_h18.g1)
ACCAG367032AG367033
length734781
length of high quality
(start - end)
320 (46 - 365)32 (78 - 109)
definitionCHROMAT_FILE: MSMg01no170_h18.b1 PHD_FILE: MSMg01no170_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:27 2005CHROMAT_FILE: MSMg01no170_h18.g1 PHD_FILE: MSMg01no170_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACCGTAGAAGTGCCACCATCCCTCCAGGCATACATCTATGGACG
AGTAGGAAACAAACATATAAGATGTCTAAGAGGAGAAAAAGAAAGGGTTA
GAGAAAGATGGCACAATGTGAAAAATAAATGAGAATCTCCTGGGTGTTTT
AAGTTAAAACACATAAATCTGCCCCCAGCCTACAGACCAGCCAAAGATAC
AAAGATGGCTGTACACTCCCAGGAACTTGACTTAAGGCCCAACTATCAGA
GAGACTCTAGAATTTAATGTATAATTTGGCTGAGGAGGGGGGCTCATGGT
GGATTACTTAATTATTCTTTGTACCCCCCGCANACCACTACACTTCTGAA
GATAACCTGCTTATATTTTGTAACCTCCAAACTCACCACTGAAGTGGTTT
GGCGGTCCATCAAAATCCTTTTCATGTGTCCAACCAGAGACCCATTTACT
TGTGCCAGAAACATAAGGAGATTCAAGGATGAAACTTGAGAGAACAAAGG
CAACAGGCCATAGTAGAGCTCCAGACTTGCACCAGAGCCCTGGGTTGAAG
CCCAGCCCTGCCAACCGTCTGTCACGCGGTCTGACCCAACAGTTCATGCA
GGCAAAGCCGGCATCGTGACTTCCCTGCAGAGTAGCCACATTTGAAGACT
ATGGCGCTCAGTGGTTTATTACTATCAGTTTATT
ACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGAGGTGGTGTGTGGTGGGGA
TGGGGGAGTNNNNNNNTTTTTCCCCCTCTTTATTCTTCTTGTATTTTGTT
TTCCTTTCCCCTCTGATATTGCTCGTCACAACGTCGCAACGGCTAGGATT
AAAACTCCTAGCGACAGCAGATGCTGTGGTGCTGGTGGACAAAGATACCT
CTTTTCCATTGTTGGAGACACCGTAGGCTTGCATATAAACATTGTATACC
TGTTCGGCGGCTCCTCTTTTTTTTTTATTCAGGACCCCGCGACCACAAGA
GAAAATTTTGGGTGGGTCCAAAAAGCGAGAACCCNGTTTGGTGTGTTTTT
TTGTTTGTTGGGTTGNCCCCTAAAAAAAAAAAAAAAACTGGGTGGGGGGG
GGGGGGGTTTTTCTCTCTCGCACCTCCCTTTATATTACACCCGTTTCCCC
CCTATTGTTGTCTTTCTGTTCTCAATTGTATCCTCTACCCTCCCTTATAC
TCTCCTCTGCCTCTTCTGCTTCGTCCTATTCCCCTTCGCTCGCTTTCTTA
TGTGCTAATTGATCTGATCTCACGTACTTCCATTATTTCTTCTGCATCTC
CACTCATTTACGTATTCCTTCTGGTTCCGTGTCTTTCTTTAATTCTTTCT
TCTTCTCGGTGCAGCCATCTGACCCTCACACTCCAATTCGCAACAACATA
TCCACCATTCCTTTCTATTCCTACCACCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_h18.b1 MSMg01no170_h18.b1 CHROMAT_FILE:
MSMg01no170_h18.b1 PHD_FILE: MSMg01no170_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:27 2005
         (320 letters)



>mm_chr2_58373489_58374213
          Length = 725

 Score =  565 bits (292), Expect = e-165
 Identities = 311/320 (97%), Gaps = 5/320 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaccgtagaagtgccaccatccctccaggcatacatctatggacgagtaggaaa 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaccgtagaagtaccaccatccctccaggcatacatctatggacgagtaggaaa 264

                                                                       
Query: 65  caaacatataagatgtctaagaggagaaaaagaaagggttagagaaagatggcacaatgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaacatataagatgtctaagaggagaaaaagaaagggttagagaaagatggcacaatgt 324

                                                                       
Query: 125 gaaaaataaatgagaatctcctgggtgttttaagttaaaacacataaatctgcccccagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 325 gaaaaataaatgagaatctcctgggtgttttaagttaaaacacataagtctgcccccagc 384

                                                                       
Query: 185 ctacagaccagccaaagatacaaagatggctgtacactcccaggaacttgacttaaggcc 244
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctacagaccagccaaagatacaaggatggctgtacactcccaggaacttgacttaaggcc 444

                                                                       
Query: 245 caactatcagagagactct-----agaatttaatgtataatttggctgaggaggggggct 299
           |||||||||||||||||||     ||||||||||||||||||||||||||||||||| ||
Sbjct: 445 caactatcagagagactctcctctagaatttaatgtataatttggctgaggagggggact 504

                               
Query: 300 catggtggattacttaatta 319
           ||||||||||||||||||||
Sbjct: 505 catggtggattacttaatta 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 725
Length adjustment: 9
Effective length of query: 311
Effective length of database: 716
Effective search space:   222676
Effective search space used:   222676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)