BAC Information

Click to search

BAC

Clone NameMSMg01-170I01
Chromosome2 (Build37)
Map Location 101,976,858 - 101,977,148
singlet/doubletsinglet
Overlap geneLdlrad3
Upstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9
Downstream geneLOC674202, Trim44, Fjx1, E430002G05Rik, Slc1a2, Cd44, Pdhx, Apip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170I01.T7 (MSMg01no170_i01.b1)MSMg01-170I01.TJ (MSMg01no170_i01.g1)
ACCAG367045AG367046
length716700
length of high quality
(start - end)
---287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no170_i01.b1 PHD_FILE: MSMg01no170_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:28 2005CHROMAT_FILE: MSMg01no170_i01.g1 PHD_FILE: MSMg01no170_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTCATATTTGCGGCGCCAAANGAANCCCACATCCTACCCGCCTNGNAA
NNNNNANGATTCCGNCACCAGGAAGGNACAAGAGAANGACCCAGNGACCG
GNNGAGGNAGAGTATTTCCCGNAAGCCCCGACAGNGNGGANGAGACCNGG
GNNCNGCCCAAGGCAAAGGGCGAACGACCGGACGCCGCCGACGCAGCCGA
CGAACGGNACACAGACCNAACAACAGACGGCNAAACACCNAGAGGAAATT
TTTTTGGCTTCTACCAGCAGNTTATTTTGTTAATTAAAATTTTTAAATTC
AGTCTGACAACCTTCTTGAGTGGTTACCAACCGGCCGAACCCCGGGCAAA
GAGTTTTTTTTTTTTCCCCCCCCCCCCCCCGGNGAGAAGNNAAGANAGNA
AGGGGGGNGGGNNGGAAAAAAAGNGAGNNNAAAAAAAGGCGGGGGGGGGG
GGAGNNAAAANAAAAAAACAAAAAACAAAGCCCCGCACACACCCGGCCGA
GACCCAACAGCCCACCCGAGACAGACGAAACCCAAAGCGGCCCACCCGCC
CAGCGGGGCCCACCCAACGGCGACAGACCCCAACCACCAGCCACCCCCAA
ACCCCCCGCCCCGGGCCCCCGCGAACAACCAGGACCCCCCGAACCACCCC
CCCACCCCCCCCCTTTTTTTTTTTTTTCCCCCACAACCGCATCTCATATC
ATTCCCCCTCATCCCC
CGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGCTGTAAAAAAGCCAAAGACC
GCTTCTCTTAAACATGCTTCTTAATATTCAGTCAGTTAAACACAGGTCTT
CCCCAGGTGCCATCATCAGCCCATAAGTATTTAGTAGTGGGAGATGCAGC
CACACATGCACAGAGAAAAGAACCTTCTTCCCCAAGCTCAGCTGTCCATG
GACTCGGACACAAAGGTGAAAAGCCACATTCGTACCAGGAACATTTACGG
ATCATCTCCTGGGAGAAAGGCTCTCCTGACCCAGATTCCATAGCCTTCCC
TATATTTTCCAACCTTATATTTAGGCCCCCCCCACCCTACAAAAGTCCTG
AGGTAAGGATGGTGGAGACTTTTACAGGCCCATCTAATTCACAGCCTGGT
GTGAATCAAATCCACATTTTCCAGCCTCAAATGGATTTTCAAAGAGTACA
GGATTCCTGGCTTGTTTACCCATTCCACTTCTGGTTTGGGTAGCCGAGGG
ATGTTTGCAATTAATGAGTATGGTGCCTTCTCCAAATGTAAATGGCATTC
CTGATAACGGACCGTTTACTGTGTGCCCTCTAGGTGCCAGGCTCCGTTAC
GAACACCTCATTTTCATAACCAGGCCATTCAGAGCTACTATTACTTCCAT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_i01.g1 MSMg01no170_i01.g1 CHROMAT_FILE:
MSMg01no170_i01.g1 PHD_FILE: MSMg01no170_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:28 2005
         (287 letters)



>mm_chr2_101976658_101977348
          Length = 691

 Score =  528 bits (273), Expect = e-154
 Identities = 285/291 (97%), Gaps = 4/291 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgctgtaaaaaagccaaagaccgcttctcttaaacatgcttcttaatattcagtcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgctgtaaaaaagccaaagaccgcttctcttaaacatgcttcttaatattcagtcagt 260

                                                                       
Query: 61  taaacacaggtcttccccaggtgccatcatcagcccataagtatttagtagtgggagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaacacaggtcttccccaggtgccatcatcagcccataagtatttagtagtgggagatg 320

                                                                       
Query: 121 cagccacac----atgcacagagaaaagaaccttcttccccaagctcagctgtccatgga 176
           |||||||||    |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagccacacagagatgcacagagaaaagaaccttcttccccaagctcagctgtccatgga 380

                                                                       
Query: 177 ctcggacacaaaggtgaaaagccacattcgtaccaggaacatttacggatcatctcctgg 236
           |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 381 ctcggacacaaaggtgaaaagccacattcgtaacaggatcatttacggatcatctcctgg 440

                                                              
Query: 237 gagaaaggctctcctgacccagattccatagccttccctatattttccaac 287
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagaaaggctctcctgacccagattccatagccttccctatattttccaac 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 691
Length adjustment: 9
Effective length of query: 278
Effective length of database: 682
Effective search space:   189596
Effective search space used:   189596
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)