BAC Information

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BAC

Clone NameMSMg01-170L10
Chromosome2 (Build37)
Map Location 119,242,880 - 119,347,417
singlet/doubletdoublet
Overlap geneInoc1, LOC100043612, Exdl1
Upstream geneEif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1
Downstream gene1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170L10.T7 (MSMg01no170_l10.b1)MSMg01-170L10.TJ (MSMg01no170_l10.g1)
ACCAG367192AG367193
length719724
length of high quality
(start - end)
311 (36 - 346)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no170_l10.b1 PHD_FILE: MSMg01no170_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:44 2005CHROMAT_FILE: MSMg01no170_l10.g1 PHD_FILE: MSMg01no170_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,242,880 - 119,243,186)(119,347,135 - 119,347,417)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACATT
TCATTGCTATTCATCTTCCTCTAGACCCTTTGTCAGACTGTCTTTTTGGT
ACATTTAATAAAGTATGCAAGCTGATAAAAATAATGGCAGATAAATGTTT
CCAAGAAGACCTCAAACACTCCTCTTTGGATAAGCCTGTGAAAACTTGGG
ATGGGTTGAGCAACAAGATAAAAGCACAAAAGGAAGGTGCTCCTTGGCTA
ACTGTTCTTCCTGGAGCAAAAGAAAACAGCAAGGTGGGAAAGCAGAAATG
TGGTTCTTTTCTCTAAACACTGAGTTTGGTCACATCGCTATTCTGCCTAN
CTACTTTCACATACCTNTTCATGGACTGTGGAAGAATTTTTGTCTGGCTA
TGATCAATGAGGAAAGAAAGAAAGTAGAAGACGTAGGCAGAGTACCCAAT
CCAATGAACCAAAGGCAACCTTTCAGGGCCTTTTGTCAGCAATCTTGGGA
GTTCTGTTGTGATAAATAGGATATGGGAACACAGAAATGCTCAATGCTGA
AACCATAGCAGAAATACTACCAGGTACCCCCCCCCCGCCCCCCGCCCGGA
AAGTTTTAACTACTGAATGGTTAGTACAAGCATTACTCAATGTTCACGTA
TAGTCTACCTGGGAACCATAATCCAGATCAGGCTGTTGCGAATGTAAACA
TTACATTGTTCCATTGTCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATGTCAGCCTGAGCTACATGAGT
CCCTGTTTTAAAACAGCAAAAAATCTTCCCCCAAATATGTGAATATACTA
AAGCAGCACACACCTGTATTTCTTTAGTCCTTAGGAAGCTGAGGCCAGGG
CATGGTGAGGTCCAGATAAGCATGGGCTGCATAGTAAGTTCAGTATCACT
GTGGCTCTGTGATGGGATCCTTCCCCCGACACCTGTAATCCCAGCTCTTG
GGAGGCAGAGGCAGGAGGATTTCTGAGTTCCAGGCCAGCCTGGTCCACAG
AGTGAGTTCCATTATATTTCCCCNTACANACCCCAACCCTGTCTCGAAAA
AACAAAAAATAAAATAAAATATAGAAATTCAAAGACAGGCATGGTGGCAC
ATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGAATTTCTGAGT
TCCAGGCCAGCCTGGTCCACAGAGTGAATTCTAGGACAACCAGGGCTACA
TAGAGAAACCCTGTCTAGTCGTAGACTTCTTGTCTGTCTAGTGGTAGACT
ACTTGTCTGCTTTGTACAGAGCCTAAGTGGGGTCGCAGTCACCACACATA
GAATCATTTATTACAGACCATCCTTTACTAAGGCGCCGGGCGTGCGCGCG
CGCACACAGAACCACACCCACCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_l10.b1 MSMg01no170_l10.b1 CHROMAT_FILE:
MSMg01no170_l10.b1 PHD_FILE: MSMg01no170_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:44 2005
         (311 letters)



>mm_chr2_119242676_119243386
          Length = 711

 Score =  594 bits (307), Expect = e-174
 Identities = 307/307 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacatttcattgctattcatcttcctctagaccctttgtcagactgtctttttgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacatttcattgctattcatcttcctctagaccctttgtcagactgtctttttgg 264

                                                                       
Query: 65  tacatttaataaagtatgcaagctgataaaaataatggcagataaatgtttccaagaaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacatttaataaagtatgcaagctgataaaaataatggcagataaatgtttccaagaaga 324

                                                                       
Query: 125 cctcaaacactcctctttggataagcctgtgaaaacttgggatgggttgagcaacaagat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctcaaacactcctctttggataagcctgtgaaaacttgggatgggttgagcaacaagat 384

                                                                       
Query: 185 aaaagcacaaaaggaaggtgctccttggctaactgttcttcctggagcaaaagaaaacag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaagcacaaaaggaaggtgctccttggctaactgttcttcctggagcaaaagaaaacag 444

                                                                       
Query: 245 caaggtgggaaagcagaaatgtggttcttttctctaaacactgagtttggtcacatcgct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaggtgggaaagcagaaatgtggttcttttctctaaacactgagtttggtcacatcgct 504

                  
Query: 305 attctgc 311
           |||||||
Sbjct: 505 attctgc 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no170_l10.g1 MSMg01no170_l10.g1 CHROMAT_FILE:
MSMg01no170_l10.g1 PHD_FILE: MSMg01no170_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:45 2005
         (283 letters)



>mm_chr2_119346969_119347651
          Length = 683

 Score =  547 bits (283), Expect = e-160
 Identities = 283/283 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgtcagcctgagctacatgagtccctgttttaaaacagcaaaaaatcttcccccaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tatgtcagcctgagctacatgagtccctgttttaaaacagcaaaaaatcttcccccaaat 390

                                                                       
Query: 61  atgtgaatatactaaagcagcacacacctgtatttctttagtccttaggaagctgaggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 atgtgaatatactaaagcagcacacacctgtatttctttagtccttaggaagctgaggcc 330

                                                                       
Query: 121 agggcatggtgaggtccagataagcatgggctgcatagtaagttcagtatcactgtggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agggcatggtgaggtccagataagcatgggctgcatagtaagttcagtatcactgtggct 270

                                                                       
Query: 181 ctgtgatgggatccttcccccgacacctgtaatcccagctcttgggaggcagaggcagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctgtgatgggatccttcccccgacacctgtaatcccagctcttgggaggcagaggcagga 210

                                                      
Query: 241 ggatttctgagttccaggccagcctggtccacagagtgagttc 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ggatttctgagttccaggccagcctggtccacagagtgagttc 167


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)