BAC Information

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BAC

Clone NameMSMg01-171D01
Chromosome2 (Build37)
Map Location 170,359,548 - 170,359,738
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668954, Tshz2, LOC100043737, LOC100043910, Zfp217, Silg111, LOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4
Downstream gene4930470P17Rik, Dok5, LOC668955, LOC100043743
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171D01.T7 (MSMg01no171_d01.b1)MSMg01-171D01.TJ (MSMg01no171_d01.g1)
ACCAG367510AG367511
length737719
length of high quality
(start - end)
321 (46 - 366)191 (128 - 318)
definitionCHROMAT_FILE: MSMg01no171_d01.b1 PHD_FILE: MSMg01no171_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:21 2005CHROMAT_FILE: MSMg01no171_d01.g1 PHD_FILE: MSMg01no171_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTCAGTGGCAATGACAGACAAACGTATGGATTGCAATTTCTCGA
TTTGAGCCAGGAGAGTGCATTACTGCATTGCTGGTTTTAACTGTCACCTT
GATGCAACAGAGAATCACCTGGGATCAGAGTCTTAATGAGGAATTGTCTC
GATGTAGATGCCCTTTGGGCATGTCTGTGGGGGGTTATTTTGATGGTTGA
TTTATGAACGAAGACATGGCCCTATGTGGGCGGCGCCATTCCCTACGCTG
AGCTCTGGACTGGTTCAGACTAGAGAACTCCCTTAAATCAGTAACTAGCA
GACTGAGCTCAGCCCGTTTTTTCTGACCCCCCCCCCCTGTAACTCAGGAC
TGTGAACTACAATAAAACCTTTTCCTCCTAAGTTGATACCCCCCCCCCGC
CCCCAGAATATTTTAATGCAGCAACAGAAGTACAACCAGGGCAGTCTATA
ACAGCAAAGGGTAAACAACTTGTGTAACTAGAGAATAGTTAATTATCGTC
TCTAGGGTCAAAGTAAATGAGGCTGGGGTTTGGTTCCTGTTCTCTTGTGC
CCAGTCTGATAGCTTCTTGCGAGAACGGATCGTCTGTGCCCTTATCCTCA
CCTGTCTGTTTTACTATTATTCGCCCCTATTTTGTGTTCCCCGTTATCCG
CCTATACGTTATTCTTCACCGTCATTGTCCCGCCATC
TCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATCACAGACTAATAATAGGGTGT
GTCAAAGGGACCCGTCATTTTGACCGGAAAATTGTTTTTCGGGAAACAAA
GTCGGTGTGGCATTTATAGCAGCCCCTCTGGAGGTTTGCAGAACAAGAAA
AAGAGGAAATTTAATTCCATTATTTTCCTGTGCCCAATAAGTGATGAAGC
CTAGAAGAAAGATCAGTGTGCTGGCACATGCACTTGTGCGCATGAGAACA
CACACACACACACTCACACACTTTTTGAAAGGGGGACACATTTTCTTTTA
CTCTCTAACATAGATAGGAATGAGTCGCTTCTAACCACTCTTACCCTTTC
CTTGAAAAGTCTGATTTTGAATAAAGTAAAAAAATCGCACTAAATACCAT
AGTGGGAAATGGGGCCGGGGGCCGGGGAGTGGGGTGGGGAAGGCTCTCGA
AAACCGTTTATGTGACATGCTGTTGTGAGGATTTCAGACCTGGGTTGGGG
ATGGAGAGAGTCAGTGCCCCTACCCTCTCTTCTTCAGGCCCAGATCTTCT
CTGTGAAGCCGATCCTTCCTGGAGAAACAAAGAGCCTGTGCTGCTTCTTA
ATACACCTTGACTGACCGTTTTCTTGTTTGTGTGATCTTAAAGAATCTTA
TTGGATTAGCCTACACTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_d01.g1 MSMg01no171_d01.g1 CHROMAT_FILE:
MSMg01no171_d01.g1 PHD_FILE: MSMg01no171_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:21 2005
         (191 letters)



>mm_chr2_170359348_170359938
          Length = 591

 Score =  362 bits (187), Expect = e-104
 Identities = 190/191 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaattgtttttcgggaaacaaagtcggtgtggcatttatagcagcccctctggaggttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aaaattgtttttcgggaaacaaagtcggtgtggcatttatagcagcccctctggaggttt 332

                                                                       
Query: 61  gcagaacaagaaaaagaggaaatttaattccattattttcctgtgcccaataagtgatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gcagaacaagaaaaagaggaaatttaattccattattttcctgtgcccaataagtgatga 272

                                                                       
Query: 121 agcctagaagaaagatcagtgtgctggcacatgcacttgtgcgcatgagaacacacacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 agcctagaagaaagatcagtgtgctggcacatgcacttgtgcgcatgagaacacacacac 212

                      
Query: 181 acacactcaca 191
           |||||| ||||
Sbjct: 211 acacacacaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)