BAC Information

Click to search

BAC

Clone NameMSMg01-171I14
Chromosome2 (Build37)
Map Location 52,064,083 - 52,064,369
singlet/doubletsinglet
Overlap geneNeb
Upstream geneLOC666802, LOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1
Downstream geneLOC100041670, Arl5a, Cacnb4, OTTMUSG00000012638, Stam2, Fmnl2, Prpf40a, Arl6ip6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171I14.T7 (MSMg01no171_i14.b1)MSMg01-171I14.TJ (MSMg01no171_i14.g1)
ACCAG367747AG367748
length714738
length of high quality
(start - end)
309 (46 - 354)288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no171_i14.b1 PHD_FILE: MSMg01no171_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:47 2005CHROMAT_FILE: MSMg01no171_i14.g1 PHD_FILE: MSMg01no171_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTTTGAGCCCCATTTTTTAATGGGGTTGTTCAATTT
TCTGAAGTCCACCTTCTTGCCCTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTGTTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGCACATGCCATTGCTGTTC
TGTTCAGGAATTTTTTTTTTGTGCCCATATCTTCAAGGCTTTTCCCAACT
TTTTCCTTTACCTCCTTNAGCGTNTACCGGTTTTATGTGAAGTTCTTTGA
TCCACTTAGATTTGACAAANNTACNAAAGATAAGGATGGATCGATTCGCA
TTCTTCTACATAACAACCAGTTGTGTCAGCACCAATTGTTGAAAATGCTG
TCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTTGAAGATCAAGTGACC
ATAGGTGTGTGTGTTCATTTCTGGGTCTCCCAATCTATTCCATTGGGCTA
CTTGTCCGCTTTTATTCCCGTACCTTGCACGTTTCCACTTTTTTTGTTCT
TCACCATTTTTCTAGCTTTGCTTGGGCGTTTTACTTACACCTTATTTCAC
TCTTGTTTCTTTTT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTGCCTTAAGGAGTCAGTATAAGGTG
ATGTGCTGTAAGAGTTAGCTCACTGGAGTGCTATTGGCATTAAGGAGCGG
TTGACATAGGAAAGGTTTACCAAAGAGGCTGCAGTTTTAGGTAGACAGGG
TACCTCACCTCTGCTACAGTTAGCTACCTGGACAGAAGGAGGGAGCTTGC
ACATGCAAATGGTCAGGAAGGTTTAGGGAATGGGACAGCATCTCCTCTAA
TCTGGACAAGCCTGCCTGCTCCTATCACCACCTTCTCTCCTGCCCTAGCT
CCTGGGCTCGTTNGGCTCNNTCCAGAAACATNGACACTGGATGATGGGAA
TAAAGTCATTTTGTAGCCCCCCCTGAAGAAAAAACCTTTCCTATCAGGTA
GTGATGAGAAGACCTACGATGAGTCTTCTGCATCTGACATAGGGCTGTAA
TGTGTGTTCAGGCTTCCCTGTGAGGTGGCCTGTGTCATTATGTACTACAT
TCATATTCTCTCTCTTTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCTGTC
ATTGAATTTCTTGTAAGTAGTTTTTTTTGTGACTCACACAGCAAAATGTT
TATTGTAATTTGTTTGTGGTTTTTTTCATCCTTATCGGGGTTCTTGAAGG
CCTCAACCCTCACTTATTTTTTTGTATTCTCCCCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_i14.g1 MSMg01no171_i14.g1 CHROMAT_FILE:
MSMg01no171_i14.g1 PHD_FILE: MSMg01no171_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:47 2005
         (288 letters)



>mm_chr2_52063883_52064570
          Length = 688

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgccttaaggagtcagtataaggtgatgtgctgtaagagttagctcactggagtgcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 agtgccttaaggagtcagtataaggtgatgtgctgtaagagttagctcaatggagtgcta 260

                                                                       
Query: 61  ttggcattaaggagcggttgacataggaaaggtttaccaaagaggctgcagttttaggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggcattaaggagcggttgacataggaaaggtttaccaaagaggctgcagttttaggta 320

                                                                       
Query: 121 gacagggtacctcacctctgctacagttagctacctggacagaaggagggagcttgcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacagggtacctcacctctgctacagttagctacctggacagaaggagggagcttgcaca 380

                                                                       
Query: 181 tgcaaatggtcaggaaggtttagggaatgggacagcatctcctctaatctggacaagcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcaaatggtcaggaaggtttagggaatgggacagcatctcctctaatctggacaagcct 440

                                                          
Query: 241 gcctgctcctatcaccaccttctctcctgccctagctcctgggctcg 287
           ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctgctcccatcaccaccttctctcctgccctagctcctgggctcg 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)