BAC Information

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BAC

Clone NameMSMg01-171L17
Chromosome2 (Build37)
Map Location 50,562,361 - 50,562,671
singlet/doubletsinglet
Overlap genenone
Upstream geneKif5c, 2310010M24Rik, Lypd6, 2010311D03Rik, LOC666781
Downstream geneLOC227885, Rnd3, LOC666802, LOC666810, LOC100041614, Tas2r134, LOC433426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171L17.T7 (MSMg01no171_l17.b1)MSMg01-171L17.TJ (MSMg01no171_l17.g1)
ACCAG367876AG367877
length743731
length of high quality
(start - end)		314 (45 - 358)194 (121 - 314)
definitionCHROMAT_FILE: MSMg01no171_l17.b1 PHD_FILE: MSMg01no171_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:01 2005CHROMAT_FILE: MSMg01no171_l17.g1 PHD_FILE: MSMg01no171_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTGTGATTGCATGGTCATGGAGGGAAGACAGATCTCTGTTTCTGG
CTCCAGTAGAGGCAGTGGCCACCAGTTTCAAGTGATGGCGGGTAATTGTG
TCCTTCAAAGGCCTTCAGTAATGTCCGCAGATCTGAGAATGTCACGAAAC
AGGAGTTTGTTTGTAAGGTGACCCTGGGTTCCAGTGGTGTTGACAGCAGC
CTCAATAGGGAATGCATATATCAGAGCAAGTTCCTTGTGCTCACAGATAA
GCTCTGTGGAAATCAAAAATGTTAAACATTCAGGGTGGTCTCTTCAATGG
GAGAGATANATTCCNGTCCCNTGCGNACCCATCCTGGAATTTATGGAGTT
AACAGCCTGGTACCCTGTCCTATAAATAGAACCAAGCCATACCAGACTTG
CTCAGACTTTTATGTTTATCCCAGATTCTTCCTTCCTAGACCTTTGTCTT
GAACATTGTTTCTAATTCAATAGAAGCCATTCTATGGGAGGTGTCACATG
TACTTTACAAATGGAGCCGACATGACCTCTGTGCTGTCTGTAGGGAGAAG
CCACATCTGACTTCCTTAAAATTTTATGTATCTCGTGATCCTCCCTAGGG
CTCTGATCTTGATCATCGTCTTTCATGCTATGGAACCAATCTTTAGGGAA
GAGTTCCTATGCACTCTGTTCAACTCTTCTGTTTTTCACCCTT

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCATGAATGGGT
GTTGGATTTTGTCGAACCTTTCACTGCATCTAACAAGATGATCAGGTGGT
TTTTGTCGTTGAGTTTGTTTATATAATAGATTACATTGATAGATTTCCGT
ATATTAAACCATCCCTGCAACCCTGGAATGAAACCTACTTGGTCAGGATG
GATGATTGTTTTGATGTGTTCTTGGATTAGGTTATCGAGAATTTTATTGA
GGATTTTTGCTTCTATATTCTTAAGGGAAATTGGCCTGAAGNNCNCTATC
TGNGTTGGCCTCCAANACCANNNACCCANAGNAGTAGNGNGGNNNNGNNG
NNNGNNNNGNNAAAAGNNNAAAANGAAAAAGGGGGGGGGGGGGGGNNGNG
NNNNNNNGGNNNNNGGNGNNNGGGGNGGGGNGGGGGGGGGGGGGGGNGGG
GNGGGNGGGGGGGGGGGGGNGGGGGGGGGGGGGNGGNGGGNGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGNNNGGGGGGGGG
GGGGGGGGGGGGGGGGNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGNGGGGGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_l17.b1 MSMg01no171_l17.b1 CHROMAT_FILE:
MSMg01no171_l17.b1 PHD_FILE: MSMg01no171_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:01 2005
         (314 letters)



>mm_chr2_50562158_50562871
          Length = 714

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtgtgattgcatggtcatggagggaagacagatctctgtttctggctccagt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtgtgattgcatggtcatggagggaagacagatctctgtttctggctccagt 263

                                                                       
Query: 64  agaggcagtggccaccagtttcaagtgatggcgggtaattgtgtccttcaaaggccttca 123
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agaggcagtggccaacagtttcaagtgatggcgggtaattgtgtccttcaaaggccttca 323

                                                                       
Query: 124 gtaatgtccgcagatctgagaatgtcacgaaacaggagtttgtttgtaaggtgaccctgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtaatgtccgcagatctgagaatgtcacgaaacaggagtttgtttgtaaggtgaccctgg 383

                                                                       
Query: 184 gttccagtggtgttgacagcagcctcaatagggaatgcatatatcagagcaagttccttg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gttccagtggtgttgacagcagcctcaatagggaatgcatatatcagagcaagttccttg 443

                                                                       
Query: 244 tgctcacagataagctctgtggaaatcaaaaatgttaaacattcagggtggtctcttcaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgctcacagataagctctgtggaaatcaaaaatgttaaacattcagggtggtctcttcaa 503

                      
Query: 304 tgggagagata 314
           |||||||||||
Sbjct: 504 tgggagagata 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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