BAC Information

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BAC

Clone NameMSMg01-172I11
Chromosome2 (Build37)
Map Location 57,523,159 - 57,523,428
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
Downstream geneGalnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062, Acvr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172I11.T7 (MSMg01no172_i11.b1)MSMg01-172I11.TJ (MSMg01no172_i11.g1)
ACCAG368411AG368412
length776727
length of high quality
(start - end)
275 (42 - 316)---
definitionCHROMAT_FILE: MSMg01no172_i11.b1 PHD_FILE: MSMg01no172_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:01 2005CHROMAT_FILE: MSMg01no172_i11.g1 PHD_FILE: MSMg01no172_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTTAAAAATAAGAGTCAGAGAACAGATATCAAAAGCTACTAGTAATGT
ACCTTTATTAGACAGTTTCTGCATAGTTTACACCTGATGGAAATGCATTT
TCATCTAGGAAGACACAATGTCTTAGAGTCCAATAAGTATACTAGAGTTA
GCAGACAGAACTTGGTGAAAAGAGAAACTTGTCTCACTTCTCACATCAAA
TGAGATGGAGCTTATCAAAAACACTAGTCAGATACATAGATGATAGATAG
ATAGATAGATAGATATTTTGATAGATAGATAGATAGATAGACAGATAGAT
AGATTTTTTTTTTTTTTCCCCCCCCCCCCCCCCTTTGTATTTTTTTTATT
AGTATTTTATGATTTTCCCCCCACATAAAAAAAAAAAACCTCATTGCGCT
GGCCCCTTCATTTTTTCTCCCTCTCCTGTTCTCCTTTCTCCCCTAATGTG
ACTTCTTTCTCCCCTTTTTCTTCTCTCATTTTTTTTTCCCCCCCCTCCTC
TCTTTCTCCCCATGCTTCTCCTCCTCCAATCTTCTCTCCCTTCTTTTTTT
TTTTCCCCCCCTCCTCCCCTCTTTCCCCCCTCTATTTACCCCCTTGTACC
TTTCTTTAATCTCCCTCCCGTCCCTCCTTCCTTAATTTCTTCCCCCTTTT
TCACTTTATCTTTTTTTTCTTTTCCCCCCCCTCTCCTTTTTCTTTTCCCC
ATTCTTTCCCTGTTTTTTCCCTCTTC
CGATGATAGCGGGAGGCCCGGNGGNCGCCTGGTTTCCGACGCCGNNGGNA
ANNANAGAATGTTTCGGGGAGCGAGNGGNNNAGNNCNGAGNCCCANNNNN
AAGGGGGNAANNAGATTTTCCGCAGTCCAGCGNCGAGAGNNCAANANANA
NANGGGANATTAGNTCCCTATCTGATCTAGGATTGGCAAAGATCCTTTCC
CAACCTGCTGGCGGCCTTTTTGTTTTATTGACAATGCCTTTTGCCTTACA
GATTTTTTAAATTTTATGACGCCCCATTTGTTGATTCTCAACCTTACTGT
ATAAGCCCCCGCCGCTCTTTGTTGTTTTTCACCCCCCGCGCCCGAATCAC
CGAGGTTTTTTTTTCTCCCCCCCCCCCCCCCCGTTTAACAATGTTAAAGC
AGACTACTGCAAGCCGCCACAAGGGACTAAAACATTCTTATACGTGTTTC
TGCCTTTACCTCTGTCTACGCTTTATAATTGTTCACTATATCCCTTTATA
TACCTTGTATCCCTCTTATCACACCATCCCTCCGATGTTTAATGTTTGCT
CCAATCTGCCTTTTTTCCGCATAATCACTAGAAACCCATCATGAATCCCT
CATATATCCCCTTGACTTTGACCATTCCTTCCCTTTTACCCTTCGGTGAA
CTTCCCCTGTTTGTCTTTTTTTCTATCGCTCGCCGTATTTCGCCCTCTAT
TTTCTTCTTCGCACGTTCTGGCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_i11.b1 MSMg01no172_i11.b1 CHROMAT_FILE:
MSMg01no172_i11.b1 PHD_FILE: MSMg01no172_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:01 2005
         (275 letters)



>mm_chr2_57522991_57523665
          Length = 675

 Score =  484 bits (250), Expect = e-141
 Identities = 265/270 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttaaaaataagagtcagagaacagatatcaaaagctactagtaatgtacctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 438 gaattcatttaaaaataagagtcagagaacagatatcaaaagctactagcaatgtacctt 379

                                                                       
Query: 65  tattagacagtttctgcatagtttacacctgatggaaatgcattttcatctaggaagaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tattagacagtttctgcatagtttacacctgatggaaatgcattttcatctaggaagaca 319

                                                                       
Query: 125 caatgtcttagagtccaataagtatactagagttagcagacagaacttggtgaaaagaga 184
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 318 caatgtcttagagtccaataagtatactagagttagcagaaagaacttggtgaaaagaga 259

                                                                       
Query: 185 aacttgtctcacttctcacatcaaatgagatggagcttatcaaaaacactagtcagatac 244
           |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 258 aacttgcctcacttctcacatcaaatgagatgtagcttatcaaaaacactagtcagatag 199

                                         
Query: 245 atagatgatagatagatagatagatagata 274
           ||||||||||||||||||||||||||||||
Sbjct: 198 atagatgatagatagatagatagatagata 169


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)