BAC Information

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BAC

Clone NameMSMg01-172J11
Chromosome2 (Build37)
Map Location 180,881,759 - 180,881,965
singlet/doubletsinglet
Overlap genenone
Upstream geneOsbpl2, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2
Downstream geneEef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172J11.T7 (MSMg01no172_j11.b1)MSMg01-172J11.TJ (MSMg01no172_j11.g1)
ACCAG368454AG368455
length792753
length of high quality
(start - end)
---208 (74 - 281)
definitionCHROMAT_FILE: MSMg01no172_j11.b1 PHD_FILE: MSMg01no172_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:05 2005CHROMAT_FILE: MSMg01no172_j11.g1 PHD_FILE: MSMg01no172_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGGA
ATTCCATGGTGTCCCCTGAGGCCTGTCAAGCTATTGACTGAGTCTTTTAA
CTACATTGGTGAAGAGCCATGCTCCCTCATGTCTGCTAGGTTAGGAGTAA
GCAAAGACCTTTGTTTCACTCCAAGGCTAGGATGGCTAATTGCCAACACA
ATTCTACCTGAGGTTTTTTTCAGGCTGTTATCGATTTTATCTGTTTACCT
CTTTGAATCACCTTCTCTAAGACGTTTATGGAGGTCACTACCATTCTGTC
ATTTCTGCTTTAGTACGCTAACTTTTTGTTAATGAGTGATTAAGCCATCT
TTTTCAGATTTTGGTTACTTCCCCCCCCCCCCCCCCGTATTTTACTCCTT
TTTGCATATTCCCGATCTCTCCTTTAATAAAAAAAAAAATATTCGCTGGG
GCGCCATGCTGTATTATTTATTATTTTACGCATTTTCTTCCCTTTTTTTC
CCTATTCCTTTTTTTCTTTTTTTCTTTTTTCACCCCTCTCCTTTTTGCTG
TCTCTATTTCTCTCCCTTGCCACGTTTTTTCCATTGCCCCTACCTTATTT
TTTCCTCCTTCTCCATCATCCCGCTCTCCCCTATCTAGCTTTTTATCCCC
CTCTAATTCTCCATGTACCCTTTATTTCAATTTTTCATCTTCGTTTTTTT
CTGTTTTCTCCCCCTCCTTTTTTTTCTTTCCTCCCCCTCCACTCTTATTT
TTTTCTCATCATCTTTTTTTCGCTTCCCTGCGCCCTTGCACN
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGCTCACCCTACCCAACCTTGATCTGC
AATAACAAGAATAGGCCTTGACCCGTAAAGAGTGAGTGGAGAGTAGTCCT
ACCATCTGTCCTGCCTGGCCACTGAAGTCATGGCATGTTCTGGTACAGGT
GTTTCAATTCCAGCCCATGTGACCTAAGTCTCTGATCTCCTGTTTTCTGG
GGCCTTTGTTGCTGCAATTTAAGGATTGAGCATCTGGGCCCAGGAAAACT
AGAATAGACATGGGCCTGTTTCTTTTTTCCAGGAGTGGCAGCAAGATGGG
TTTCCGTTTTAATCATTCCCNNNACGGGCCCTTTGTGTGTGTCTATTCGT
TGTTGAGGAGTTCTCACCCCCCAAAAAAAATACTTTCCTACATCGGGTAT
CCCCTTCTGCCCTGGTTCTCTTCGCTCTTGTCTATCTCATCTTATTCATC
TTTCACGTTTCTTATTCACCGACGCCATTTTTCCCCCCCCATTTTTATTC
CATTCTGCTGTGTTCCCTTTGTCCCCTTTATCCGTTTTTTTTTTCTCCCT
ATCTTCGCATTTTTTTTTTTTCCCTTTTCCCCTTATCCCTCTTTACCGTG
CTTTTTTTCCCCGCTTTTTTCTCTTTTTCCCCGTTTTTTTCTTCCCCCTT
TTACCTTTTTCCCCCCTTTCCCCCCCTCCTCTTTCCCCTTCGTTTTTCTA
CCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_j11.g1 MSMg01no172_j11.g1 CHROMAT_FILE:
MSMg01no172_j11.g1 PHD_FILE: MSMg01no172_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:05 2005
         (208 letters)



>mm_chr2_180881559_180882166
          Length = 608

 Score =  292 bits (151), Expect = 1e-83
 Identities = 194/213 (91%), Gaps = 12/213 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctcaccctacccaaccttgatctgcaataacaagaataggccttgacccgta----aa 56
           ||||||||||||||||||||||||||||||||||||||||||||||||   | |    ||
Sbjct: 201 tgctcaccctacccaaccttgatctgcaataacaagaataggccttga---g-aggacaa 256

                                                                       
Query: 57  gagtgagtggagagtagtcctaccatctgtcctgcctggccactgaagtcatggcatgtt 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gagtgagtggagagtagtcctaccatctgtcctgcctggccactgaagtcatggcatgtt 316

                                                                       
Query: 117 ctggtacaggtgtttcaattccagcccatgtgacctaagtctctgatctcctgttttctg 176
           |||| |||||||  ||||||||||||||||||||||||||| |||| ||||||  |||||
Sbjct: 317 ctgggacaggtgggtcaattccagcccatgtgacctaagtcactgacctcctggcttctg 376

                                            
Query: 177 gggcctt--tgttgctgcaatttaaggattgag 207
           ||||  |  ||||||||||||||||||||||||
Sbjct: 377 gggc--tggtgttgctgcaatttaaggattgag 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space:   119201
Effective search space used:   119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)