Query= MSMg01no172_j20.b1 MSMg01no172_j20.b1 CHROMAT_FILE:
MSMg01no172_j20.b1 PHD_FILE: MSMg01no172_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:07 2005
(607 letters)
>mm_chr2_162839109_162840113
Length = 1005
Score = 1083 bits (560), Expect = 0.0
Identities = 591/602 (98%), Gaps = 2/602 (0%)
Strand = Plus / Minus
Query: 6 gaattccttgaatattgccaggtgttgaggcaaccatacccagtaacaaataatatccag 65
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gaattccttgaatattgaaaggtgttgaggcaaccatacccagtaacaaataatatccag 746
Query: 66 tgcatttaatattacctgaaacaaagacaccgtccacatagagcaacctcaaaccaaaga 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgcatttaatattacctgaaacaaagacaccgtccacatagagcaacctcaaaccaaaga 686
Query: 126 caacacatgacaggcttattacatttcatcaatgtatacactgaaatataaattcagata 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caacacatgacaggcttattacatttcatcaatgtatacactgaaatataaattcagata 626
Query: 186 ccaagaggccctctcccagagtgctggtcacctacatcctcccctttctctcagcatttg 245
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccaagaggctctctcccagagtgctggtcacctacatcctcccctttctctcagcatttg 566
Query: 246 aacccttttactacgagaggtagcttgtgcccaggctgcattccaggagaggtggagatt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aacccttttactacgagaggtagcttgtgcccaggctgcattccaggagaggtggagatt 506
Query: 306 tacgacacactaaaggaagccaccaggcagggcttctgggcaccccacctctgtcccgtt 365
|||||||||||||||||||||||||| | || ||||||||| |||||||||||||||||
Sbjct: 505 tacgacacactaaaggaagccaccag--acggtttctgggcagcccacctctgtcccgtt 448
Query: 366 cctccttttctcttgcttagcacacaaaagtggccagtaaccactctgtgatctcataac 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cctccttttctcttgcttagcacacaaaagtggccagtaaccactctgtgatctcataac 388
Query: 426 tcaatatccaaagctaccacggttctactctcttttctgaaggttcctgtgtccagctga 485
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 387 tcaacatccaaagctaccacggttctagtctcttttctgaaggttcctgtgtccagctga 328
Query: 486 tggagccttcagtaaatgattggatcactatccaatgagggaggggctcaggcttcctca 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tggagccttcagtaaatgattggatcactatccaatgagggaggggctcaggcttcctca 268
Query: 546 gcaatgtagtccgttcatagatgtgtaattttatagcatggagaggtgataaatcggagg 605
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gcaatatagtccgttcatagatgtgtaattttatagcatggagaggtgataaatcggagg 208
Query: 606 tg 607
||
Sbjct: 207 tg 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1005
Length adjustment: 10
Effective length of query: 597
Effective length of database: 995
Effective search space: 594015
Effective search space used: 594015
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no172_j20.g1 MSMg01no172_j20.g1 CHROMAT_FILE:
MSMg01no172_j20.g1 PHD_FILE: MSMg01no172_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:07 2005
(290 letters)
>mm_chr2_162696707_162697396
Length = 690
Score = 522 bits (270), Expect = e-153
Identities = 285/290 (98%)
Strand = Plus / Plus
Query: 1 caataggaatccagggttcaggtgaagagacatattgaccttagcagagtttgatcaggt 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caataggaatccagggttcacgtgaagagacatattgaccttagcagagtttgatcaggt 260
Query: 61 gatgtcagaacataaggaggcaaggctttccaatattatatcaacatcaagaaggctaat 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 gatgtcagaacataaggaggcaaggctttccaatattatatcaacatcaggaaggctaat 320
Query: 121 taggaactctttaccatatgtgaaaaatgttgagaaaccccgaaggttgttatcttagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggaactctttaccatatgtgaaaaatgttgagaaaccccgaaggttgttatcttagtt 380
Query: 181 agggttactatcgtaacggaacaccatgcaaccggtgttccatcaacttgaggaagaata 240
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 agggttactatcgtaatggaacaccatgcaaccagtgttccatcaacttgaggaagaata 440
Query: 241 catttatcttgcttactttttcctatcacagctcatcaccaatgaagtca 290
|||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattgatcttgcttactttttcctatcacagctcatcaccaatgaagtca 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
