BAC Information

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BAC

Clone NameMSMg01-172N23
Chromosome2 (Build37)
Map Location 4,238,744 - 4,239,221
singlet/doubletsinglet
Overlap geneFrmd4a
Upstream geneNmt2, Rpp38, Acbd7, Olah, Meig1, Dclre1c, Suv39h2, Hspa14, Armetl1, LOC100040219, LOC666495, 3110001A13Rik, LOC100040257, LOC100040163, LOC666944, 1700080N15Rik, EG634452
Downstream genePrpf18, LOC623483, E130319B15Rik, LOC666973, Sephs1, Phyh, LOC381346, LOC100040250, LOC100040426, 1110017I16Rik, Mcm10, Optn, Ccdc3, LOC100040292, Camk1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172N23.T7 (MSMg01no172_n23.b1)MSMg01-172N23.TJ (MSMg01no172_n23.g1)
ACCAG368652AG368653
length717712
length of high quality
(start - end)
273 (382 - 654)478 (71 - 548)
definitionCHROMAT_FILE: MSMg01no172_n23.b1 PHD_FILE: MSMg01no172_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:26 2005CHROMAT_FILE: MSMg01no172_n23.g1 PHD_FILE: MSMg01no172_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACCTGAGGAATACCGAAGGGCTGAGAAGCACTTGAAAAAAGTGTT
CAACATCCTTAATCATCAGGGACATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAGGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCTAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAAGCTTTTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGA
AAATTGGACATAGTACTACCGGTAGGATCCCGCAATACCCCTCCTGGGCA
TATATCCAGATTATTTTCCCCCCGCCCACAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGACAGAAGCTGGAAAGAACCAAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTATACAAAGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACTCAATCACAAAA
GAACTCACATGATATGTATTCACTGATAAGTGGATATTAGCCCAGAAACT
TAGAATACCCAAGATATAATATACAATTTTCAAAACACATGAAACTCAAG
AAGAATGAAGACCAAAG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGATGGACATTGGTTGTTCTGCTTTGTGAG
GCTCCCCTTTATTCCCTACCATGGTCTCTCCCTGAGACTGAAGTTCTCCA
TTTCAACTGGGCTGGCTGGATTCATGGCTGGCTGAGATTTTGTGGTCTCT
GTCCTCCAACTCTCAGTTGGAGACACTCAGATCCCCGCTTCTATGCGTGT
GCTGGGAATTTGTCTGAACTCAGGTCCTTATGCATACACGGCAAGCACTC
TTACCCTCTGAGACATTTCCATAGTCTTTCCATATCATTTTTTAATCCTG
TCTCCAATATACTTGTTTTTGTTGCATGGAGAGGAGGGGAAGGGAAGCCC
TAAGTGTTTGCTCCGCAGCCACAGATGACAGTAAGTCCTCTTGCTTTAGG
GTGCAATTCTTTTTTCCTCTTTCCTTACAGCTGTGACCTAGTTAATTGTA
GGTGGTAATCAAACGCCCAAATCATCAGGCTTTTGGCTTGGCTTAGGATC
TTGCTGTTAAGTGTTAGGATGTCTTCCTTACTGACCGGAACGTTTTTCCT
TTGATTATCACCATTTGCGTTTTTTTGACTTTTCACACCAACTTTTGGTT
TTTCCCTCTTTTTCTCCCCCCTGCTGTTTTCCATTTCCCCTCCCCCATAC
CTCATTTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_n23.g1 MSMg01no172_n23.g1 CHROMAT_FILE:
MSMg01no172_n23.g1 PHD_FILE: MSMg01no172_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:26 2005
         (478 letters)



>mm_chr2_4238544_4239421
          Length = 878

 Score =  808 bits (418), Expect = 0.0
 Identities = 463/478 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatggacattggttgttctgctttgtgaggctcccctttattccctaccatggtctctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 agatggacattggttgttctgctttgtgaggctcccctttattccctaagatggtctctc 260

                                                                       
Query: 61  cctgagactgaagttctccatttcaactgggctggctggattcatggctggctgagattt 120
           ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 cctgagactgaagctctccatttcaactgagctggctggattcatggctggctgagattt 320

                                                                       
Query: 121 tgtggtctctgtcctccaactctcagttggagacactcagatccccgcttctatgcgtgt 180
            |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtggtctctgtcctccaactctcaattggagacactcagatccccgcttctatgcgtgt 380

                                                                       
Query: 181 gctgggaatttgtctgaactcaggtccttatgcatacacggcaagcactcttaccctctg 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgggaatttgtctgaacgcaggtccttatgcatacacggcaagcactcttaccctctg 440

                                                                       
Query: 241 agacatttccatagtctttccatatcattttttaatcctgtctccaatatacttgttttt 300
           ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 441 agacatttccatagtctttccatatcatttttttatcctgtccccaatatacttgttttt 500

                                                                       
Query: 301 gttgcatggagaggaggggaagggaagccctaagtgtttgctccgcagccacagatgaca 360
           |||||||||||||||||||||||||||||||||||||||| |  |||| |||||||||||
Sbjct: 501 gttgcatggagaggaggggaagggaagccctaagtgtttgttttgcagtcacagatgaca 560

                                                                       
Query: 361 gtaagtcctcttgctttagggtgcaattcttttttcctctttccttacagctgtgaccta 420
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaagtcctcttgctttagggtgtaattcttttttcctctttccttacagctgtgaccta 620

                                                                     
Query: 421 gttaattgtaggtggtaatcaaacgcccaaatcatcaggcttttggcttggcttagga 478
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttaattgtaggtgggaatcaaacgcccaaatcatcaggcttttggcttggcttagga 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)