Query= MSMg01no172_p10.b1 MSMg01no172_p10.b1 CHROMAT_FILE:
MSMg01no172_p10.b1 PHD_FILE: MSMg01no172_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:32 2005
(500 letters)
>mm_chr2_6061589_6062488
Length = 900
Score = 642 bits (332), Expect = 0.0
Identities = 380/402 (94%), Gaps = 11/402 (2%)
Strand = Plus / Minus
Query: 96 tccaggtttcatctcgtgagtctccagagggcttccgagtctcacgtatcccaaatttgc 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 tccaggtttcatctcgtgagtctccagagggcttccgagtctcacgtatcccaaatttgc 841
Query: 156 ctcaaacttgctatgtagtcaagaataaccttgaccctcccctgaaagctcctgctatgg 215
||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 840 ctcaaacttgctatgtagtcaaggataaccttgaacctcccctggaagctcctgctatgg 781
Query: 216 gcatgaccacatgctttatgcggtgcttgcgattgttcccaggctttgtacaaaccaggc 275
||||| ||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct: 780 gcatggccaca-----ta------gcttgtgattgttcccaggctttgtacaaaccaggc 732
Query: 276 aagtaatctactgattaagaaaatccctggcctctaaatacttttctccctctcttcatc 335
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 731 aagcaatctactgattaagaaaatccctggcctctaaatacttccctccctctcttcatc 672
Query: 336 tccatcctaaagtctcaaatacatcagacaagtgctctactacaggtctacaaacagcct 395
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 671 tccatcctaaagtctcaaatacatcagacaagtgctctactacagggctacaaacagcct 612
Query: 396 gccagtgtatttttctgtcttgcatggaaggccttaacttggttttgtttattttgagtt 455
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gccagtggatttttctgtctcgcatggaaggccttaacttggttttgtttattttgagtt 552
Query: 456 tgttcctctttgtgtctataattcttccatctctagcattcc 497
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tgttcctctttgtgtctataattcttccatctctagcattcc 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no172_p10.g1 MSMg01no172_p10.g1 CHROMAT_FILE:
MSMg01no172_p10.g1 PHD_FILE: MSMg01no172_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:32 2005
(508 letters)
>mm_chr2_5924030_5924939
Length = 910
Score = 951 bits (492), Expect = 0.0
Identities = 505/510 (99%), Gaps = 2/510 (0%)
Strand = Plus / Plus
Query: 1 tggtttgcagtattgaggttggctttaggtttgtaagtattttgttaccgagcaattatg 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tggtttgcagtattgaggttggctttaggtttgtaagtattttgttactgagcaattatg 260
Query: 61 taattaaaaatttaagtcatgtcagaatgcattttcttcacatagtatttcatatatcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taattaaaaatttaagtcatgtcagaatgcattttcttcacatagtatttcatatatcaa 320
Query: 121 aattacacacttagttgaaatacagactaggaaatgccaggttattagtccacttttaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattacacacttagttgaaatacagactaggaaatgccaggttattagtccacttttaca 380
Query: 181 aggcttactgaatttttaggaacttcataatggcaataaatttggcatatctgaatggtg 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcgtactgaatttttaggaacttcataatggcaataaatttggcatatctgaatggtg 440
Query: 241 attgattttttttt--aagaaattatttactatgcgagtaaatctgagaaagtttaagtt 298
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 attgatttttttttttaagaaattatttactatgcgagtaaatctgagaaagttaaagtt 500
Query: 299 ttaaaatgaattatttctggtgtgtctttctttttacacatattacatataacttttgca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaaaatgaattatttctggtgtgtctttctttttacacatattacatataacttttgca 560
Query: 359 ggttggatttgctaccattttatgcaagattggttgctaccttgcacccctgcatgtctg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggttggatttgctaccattttatgcaagattggttgctaccttgcacccctgcatgtctg 620
Query: 419 atgtagcagaggatctttgttccatgctgaggggggatttcagatttcatgtatgtattt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtagcagaggatctttgttccatgctgaggggggatttcagatttcatgtatgtattt 680
Query: 479 aagcatttattttgtaataattatatgttc 508
||||||||||||||||||||||||||||||
Sbjct: 681 aagcatttattttgtaataattatatgttc 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 910
Length adjustment: 10
Effective length of query: 498
Effective length of database: 900
Effective search space: 448200
Effective search space used: 448200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
