BAC Information

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BAC

Clone NameMSMg01-173F20
Chromosome2 (Build37)
Map Location 81,996,187 - 81,996,492
singlet/doubletsinglet
Overlap geneZfp804a
Upstream geneLOC100040704
Downstream geneLOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292, LOC433440, Fsip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173F20.T7 (MSMg01no173_f20.b1)MSMg01-173F20.TJ (MSMg01no173_f20.g1)
ACCAG368992AG368993
length747750
length of high quality
(start - end)
312 (46 - 357)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no173_f20.b1 PHD_FILE: MSMg01no173_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:01 2005CHROMAT_FILE: MSMg01no173_f20.g1 PHD_FILE: MSMg01no173_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATGTGAATTTTAAACTGTAAACTTAAATAATAGAGAGGTTTCTG
CAGTTCCACGTTATTTTTAACTAACAACCACATTATACACAAAAATATCT
CCCTTCTTATCAAATGATAGGCTGTCAGAAGCAAATTTGTTCTCTCTCTT
TTTTCTTTCTATCCTATACTTTACTCTTCTCGGATACCTACAAAACACAT
TCAAAGGCAGCTGTCAGATACCTCCGTTTGAATACAGAAAATGAAATTGA
ATACAAGAAAGGGAATATATTACCTTAGTATTTTAAGACATAAAACTTTT
TTTTCATATTNAATGNATTTCGAANACTTNGCGCAGGTTGAACAATACAG
ACTAAAAAATAGGGTAGCTTTTATAAAAAAAAAATTATTATCATGAGGAT
TGAAATGAATGTGCAAAACTGCTTGTCTGTATAGTTAGGAGCCATATCTG
AAACTAAACAATTAAAAACAAAGGTTATTTCTTTCAAAATGATATGTAAA
TTAGTACTTAGCATTTATGCCAACAGGGTTGTTTTTAAAAATAACATACA
TGCTACTCATTGGTATAAATCAATACCTAAACTTCAATTTAGATTAAAGG
CTACAATTTAGATTTAATATGTGAATCCTAGTTCTAATATGCTTATTATA
AGTAAGGTTGAAAGCCATATTGATTTTTTGTAATTGTAGAATTATAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACATGATAAA
AGCAATCTACAGCAAACCAGGAGCCAACATCAAAGGAAATGGAGAGAAGC
TGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGGTGCCCATTTTCT
CCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAGTTCGACA
ACAAAAGGAGATCAAGTGGATACAAATTGGAAAGGAGGAAGTCAAAATAT
CACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCC
ACCAGAGAATTTTCTTATTCTGCACAAACGNTTCCGTGAAGTAGCTGGAT
ATAAAATTAACTCAAACAAGTCAATGGCAAAACAGTACACAGAGAATAAG
CGGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAA
TAATATAAAATATCTCGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGT
ATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGA
AGATGGAAAGATCTCCCATGTTCATGGATTGGCAGGATCAACATTGTAAA
AATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCA
AAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_f20.b1 MSMg01no173_f20.b1 CHROMAT_FILE:
MSMg01no173_f20.b1 PHD_FILE: MSMg01no173_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:01 2005
         (312 letters)



>mm_chr2_81995983_81996693
          Length = 711

 Score =  586 bits (303), Expect = e-172
 Identities = 306/307 (99%), Gaps = 1/307 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatgtgaattttaaactgtaaacttaaataatagagaggtttctgcagttccac 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaattccatgt-aattttaaactgtaaacttaaataatagagaggtttctgcagttccac 452

                                                                       
Query: 65  gttatttttaactaacaaccacattatacacaaaaatatctcccttcttatcaaatgata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gttatttttaactaacaaccacattatacacaaaaatatctcccttcttatcaaatgata 392

                                                                       
Query: 125 ggctgtcagaagcaaatttgttctctctcttttttctttctatcctatactttactcttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ggctgtcagaagcaaatttgttctctctcttttttctttctatcctatactttactcttc 332

                                                                       
Query: 185 tcggatacctacaaaacacattcaaaggcagctgtcagatacctccgtttgaatacagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tcggatacctacaaaacacattcaaaggcagctgtcagatacctccgtttgaatacagaa 272

                                                                       
Query: 245 aatgaaattgaatacaagaaagggaatatattaccttagtattttaagacataaaacttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aatgaaattgaatacaagaaagggaatatattaccttagtattttaagacataaaacttt 212

                  
Query: 305 tttttca 311
           |||||||
Sbjct: 211 tttttca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 711
Length adjustment: 9
Effective length of query: 303
Effective length of database: 702
Effective search space:   212706
Effective search space used:   212706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)