Query= MSMg01no173_k19.b1 MSMg01no173_k19.b1 CHROMAT_FILE:
MSMg01no173_k19.b1 PHD_FILE: MSMg01no173_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:24 2005
(320 letters)
>mm_chr2_127381224_127381943
Length = 720
Score = 569 bits (294), Expect = e-166
Identities = 309/314 (98%)
Strand = Plus / Minus
Query: 5 gaattctctcggccgggactactccttaaagtgtgttcctttcttcctggcatgaagaaa 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattctctcggccaggactactccttaaagtgtgttcctttcttcctggcatgaagaaa 459
Query: 65 gcaccttcctctcaggccttttaaatctgccatcttgaggaacagagagaaagtgtgcct 124
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gcaccttcctctcaggggttttaaatctgccatcttgaggaacagagagaaagtgtgcct 399
Query: 125 tgtgtgcttctgctattccttaaactgtccttgagaggatcctcccaccccacccccact 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tgtgtgcttctgctattccttaaactgtccttgagaggatcctcccaccccacccccact 339
Query: 185 cccaccgcccctcccccatcaaagcggcatgctgtgtgggtggcatgctctaccaccctt 244
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cccatcgcccctcccccatcaaagcggcatgctgtgtgggtggcatgctctaccaccctt 279
Query: 245 cccaaggactgagggtgtttggtgtccgtgggtaattctgctgagaccctgggatcctgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 278 cccaaggactgagggtgtttggtgtccgtgggtaattctgctgagaccctgggatccagt 219
Query: 305 tggcagagacattg 318
||||||||||||||
Sbjct: 218 tggcagagacattg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no173_k19.g1 MSMg01no173_k19.g1 CHROMAT_FILE:
MSMg01no173_k19.g1 PHD_FILE: MSMg01no173_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:24 2005
(565 letters)
>mm_chr2_127242359_127243324
Length = 966
Score = 1064 bits (550), Expect = 0.0
Identities = 562/566 (99%), Gaps = 1/566 (0%)
Strand = Plus / Plus
Query: 1 caagaaaagaatgttgccctgggcaaaggttgagagccacagtacttgatgcacccctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagaaaagaatgttgccctgggcaaaggttgagagccacagtacttgatgcacccctgt 260
Query: 61 gagctggcagaactctgacagtgagtaaaggttttggattgtgccccttgcttttggcga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagctggcagaactctgacagtgagtaaaggttttggattgtgccccttgcttttggcga 320
Query: 121 tgggcaaggtccatggactgcaggaggcctgctgcctgggat-ggggctgccacctgctc 179
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 tgggcaaggtccatggactgcaggaggcctgctgcctgggatgggggctgccacctgctc 380
Query: 180 gctcacgttagaaggcctccccctgactctctgaggccttgggaaagtgagctccattag 239
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 cctcacgttagaaggcctccccctgactctctgaggcctcgggaaagtgagctccattag 440
Query: 240 cagctcagacttccctcggttgccaccttgcagcagtctgacagagttgcttcctgatga 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagctcagacttccctcagttgccaccttgcagcagtctgacagagttgcttcctgatga 500
Query: 300 tgacctggaacgccataggtggagtcatttatagagagagactaaaggattctggggctc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgacctggaacgccataggtggagtcatttatagagagagactaaaggattctggggctc 560
Query: 360 ctggttctcaaggctgaggagtttaagaccagcggttgcctctggtgaggaccttcttct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggttctcaaggctgaggagtttaagaccagcggttgcctctggtgaggaccttcttct 620
Query: 420 ctctgatgggaattctgctgagtcccagcatctcatagggcatcacatggggaggcagga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctctgatgggaattctgctgagtcccagcatctcatagggcatcacatggggaggcagga 680
Query: 480 atcttggttcaggttctataaagccagagtcctatcaggccccttgctcaaagtctcctt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atcttggttcaggttctataaagccagagtcctatcaggccccttgctcaaagtctcctt 740
Query: 540 aggacagaccatatgaagctcaagaa 565
||||||||||||||||||||||||||
Sbjct: 741 aggacagaccatatgaagctcaagaa 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 966
Length adjustment: 10
Effective length of query: 555
Effective length of database: 956
Effective search space: 530580
Effective search space used: 530580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
